PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104285.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 580aa    MW: 64619.8 Da    PI: 4.7542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104285.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.52e-1402115802374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA a+s+g+ e+a+ ++++l++++s +g+p qR+aay++e+Laar+a s++ +ykal+++e +   ss++laa+++++ev+P++kf+++
  XP_010104285.1 211 RKLLIDCAGALSEGNVEEASIMMNELRQMVSIQGEPSQRIAAYMVEGLAARMAASGKFIYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFM 302
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+++e++vHiiDfdi+qG Q+++L+q++asR+++pp+lR+Tgv++pes+  s   l+ +g+rL+k+Ae+lgvpfef++ va+r++ +
  XP_010104285.1 303 AANGAIIEAFKNEKTVHIIDFDINQGSQYITLIQTIASRASKPPHLRLTGVDDPESVqrSVGGLKIIGQRLEKLAEALGVPFEFQA-VASRTSLV 396
                     *******************************************************9989999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpr+s++r++
  XP_010104285.1 397 TPSMLDCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSMNPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFESLDATLPRDSQDRTN 491
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn++aceg+er+er e ++kWr+r+++aGF+p p+s+++++ ++ l++++ ++ y+++e+ g+l +gW+d++L+++SaWr
  XP_010104285.1 492 VERQCLARDIVNIIACEGEERIERYEVAGKWRARMTMAGFTPCPMSTNVVDAIRKLIKQYCDR-YKIKEDMGALHFGWEDKNLIVASAWR 580
                     *************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.369184561IPR005202Transcription factor GRAS
PfamPF035146.8E-138211580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSLVRPADLS AASYRNPKLY SLKGSNESSG FSTQTFGSDK PRTVSVSDSY STESYEKYFL  60
DSPSDSGISR NSCNPQDFSS YNLRAASVTT LTNQNPCTTS SMSMRHRDAY QSNFTSDYLE  120
SQSLDLGDID ENTMRLKLQE LERALLDDND GEDDEDMFGS GQSMEVDGEW IDPVQNALLQ  180
DSPKESSSSD SNLSSISSNK EISLISPRTP RKLLIDCAGA LSEGNVEEAS IMMNELRQMV  240
SIQGEPSQRI AAYMVEGLAA RMAASGKFIY KALKCKEPPS SDRLAAMQIL FEVCPCFKFG  300
FMAANGAIIE AFKNEKTVHI IDFDINQGSQ YITLIQTIAS RASKPPHLRL TGVDDPESVQ  360
RSVGGLKIIG QRLEKLAEAL GVPFEFQAVA SRTSLVTPSM LDCRPGEALL VNFAFQLHHM  420
PDESVSTVNQ RDQLLRMVKS MNPKLVTVVE QDVNTNTAPF FPRFIEAYNY YSAVFESLDA  480
TLPRDSQDRT NVERQCLARD IVNIIACEGE ERIERYEVAG KWRARMTMAG FTPCPMSTNV  540
VDAIRKLIKQ YCDRYKIKED MGALHFGWED KNLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6921757925377Protein SCARECROW
5b3h_D2e-6921757925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104285.10.0scarecrow-like protein 1
RefseqXP_024026462.10.0scarecrow-like protein 1
RefseqXP_024026463.10.0scarecrow-like protein 1
RefseqXP_024026464.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLW9RNG00.0W9RNG0_9ROSA; Uncharacterized protein
STRINGXP_010104285.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]