PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104441.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family E2F/DP
Protein Properties Length: 406aa    MW: 45007.6 Da    PI: 8.4467
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104441.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.43.8e-26143208171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf+kl+ ++e+++++ln+ a  L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  XP_010104441.1 143 RYDSSLGLLTKKFVKLILEAEDRTLDLNHTAGVL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIRWKG 208
                     6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-27141209IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-34143208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.1E-16143206IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-23145208IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.97E-36219326No hitNo description
SuperFamilySSF1440748.89E-26220325No hitNo description
PfamPF164216.3E-23224323IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMDDPSTAHG FQFQLLHSHP HPLSHHHSSS SPSNPHLFPS SSSSSSSPLR PHFVAPPSNH  60
SHHRLCDFSK NSQLVQSNVK YEAQIWSPAV AGQSKVNDPA AERKPSGLGT YNIKSKVPKQ  120
TKIGSQRLKV ECLNGLSPSI NCRYDSSLGL LTKKFVKLIL EAEDRTLDLN HTAGVLEVQK  180
RRIYDITNVL EGVGLIEKTS KNHIRWKGYD GLGPSKLIDE IAGLKAEVGS LYAEEYRLDE  240
AIRDKQDRLR ALGEDENCKK YLFLTVDDIL TLPCFQNQTL IAIKAPTASY IEVPDPDADI  300
SFSQRQYKLI VRSSRGPIDL YLLSKYQGAH EEATTKQSSK KSSSVRDGEG LSFDHQGNQK  360
VSSFSLGSLG SKASGIQKII PANVDANDDY WFRSDPEVSI TNLWGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-21138214276PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026586.10.0transcription factor E2FC isoform X2
TrEMBLW9SD410.0W9SD41_9ROSA; Transcription factor E2FC
STRINGXP_010104441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-101E2F/DP family protein