PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104665.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 511aa    MW: 57281.7 Da    PI: 5.9597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104665.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-18156202148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++vkq+G + W+ Ia++m  gR +kqc++rw+++l
   XP_010104665.1 156 KGQWTDEEDRKLVRLVKQYGVRKWAQIAEKMI-GRAGKQCRERWHNHL 202
                      799*****************************.*************97 PP
2Myb_DNA-binding54.62.6e-17208250145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++ +k++w+
   XP_010104665.1 208 KDSWSEEEERILVEAHTEVGNR-WAEIAKRIQ-GRTENAIKNHWN 250
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.16151206IPR017930Myb domain
SuperFamilySSF466891.01E-29154249IPR009057Homeodomain-like
SMARTSM007176.7E-17155204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-27157209IPR009057Homeodomain-like
PfamPF139211.0E-19159216No hitNo description
CDDcd001675.29E-16159202No hitNo description
PROSITE profilePS5129420.713207257IPR017930Myb domain
SMARTSM007179.0E-16207255IPR001005SANT/Myb domain
CDDcd001671.20E-12210253No hitNo description
Gene3DG3DSA:1.10.10.604.6E-20210255IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEERRGDGFF SGGFHRPRHD HQLYPYNYSS RRPASRPPLT AIDRFLSGQS HLNSQLIQYQ  60
NNTKNSEIPL VSTANGNLGS SWQYSIDDNI LHEESFFGGL FVDHDGEAST VNRTVVQDQR  120
NGDTCSKGEA EFVENYSCKE MGKRAEKGSS SAALIKGQWT DEEDRKLVRL VKQYGVRKWA  180
QIAEKMIGRA GKQCRERWHN HLRPDIKKDS WSEEEERILV EAHTEVGNRW AEIAKRIQGR  240
TENAIKNHWN ATKRRQNSRR TSKQTVSQQK GKPQSSILQN YIRSKSLNNV SCTPNTSTIS  300
NTTASTSTLS TTEDPASNKY MMISNTNDNI NDPTVLDNPS EYSSTASGAE SPLLFPQTYD  360
DELLFMQNFF TNNNNDNQYY NIPPLVDQNV AFGCCADKTD GGDHAKENSS FVSCAIFPNK  420
QLSANSNSED FQASCSSTIP NSTTHLYSDL YLSYLLNGVP TSSLSSIAEN DNADSIKVDD  480
QYDQSSSSSN GKRDMDLIEM VTSSLFSSAN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-451542562104C-Myb DNA-Binding Domain
1msf_C4e-451542562104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104665.10.0transcription factor MYB64
TrEMBLW9SDV00.0W9SDV0_9ROSA; Transcription factor
STRINGXP_010104665.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.13e-67myb domain protein 64