PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104739.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 329aa    MW: 37382.8 Da    PI: 8.1442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104739.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+  v+++G g+W++ ++  g+ R++k+c++rw +yl
   XP_010104739.1  5 KGPWSPEEDQILISFVQKYGHGNWRALPKQSGLLRCGKSCRLRWINYL 52
                     79******************************99************97 PP
2Myb_DNA-binding51.42.5e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010104739.1  58 RGNFTIEEEETIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.99E-32199IPR009057Homeodomain-like
PROSITE profilePS5129426.668156IPR017930Myb domain
SMARTSM007175.1E-15454IPR001005SANT/Myb domain
PfamPF002493.0E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-25659IPR009057Homeodomain-like
CDDcd001674.22E-11752No hitNo description
SMARTSM007172.9E-1357105IPR001005SANT/Myb domain
PROSITE profilePS5129420.48857107IPR017930Myb domain
PfamPF002495.1E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2660108IPR009057Homeodomain-like
CDDcd001673.19E-960103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGLKKGPWSP EEDQILISFV QKYGHGNWRA LPKQSGLLRC GKSCRLRWIN YLRPDIKRGN  60
FTIEEEETII NLHEMLGNRW SAIAARLPGR TDNEIKNVWH THLKKRLNKK GHVTNKNHKS  120
VTKKDFSVKR HPTCSSRTSS SNVTDQLEPT PSLLSPQPSS SDFSSVTETE ETTNNNSDIV  180
IIKDEKKEEY KFLGNTSFAE IDESFWSEAL SVEISNTTYN PSKFPSSINS AELVYDYDTS  240
NTIGHDVDFW GRARRWLFVK RALDSQGGLA GFASGRHDCE AGFALSLAME FVGRDEARAK  300
QHCGRRGTPQ EIATKQIRCY ETPPQQEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2731085109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104739.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295633e-80KP229563.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB07) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026796.10.0transcription factor MYB4
SwissprotQ9LTC48e-72MYB15_ARATH; Transcription factor MYB15
TrEMBLW9RPC80.0W9RPC8_9ROSA; Myb-related protein Myb4
STRINGXP_010104739.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-62myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]