PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010104935.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB_related

Protein Properties

Length: 210aa MW: 23827 Da PI: 10.3194

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010104935.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	9.2e-11	65	99	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE e+++da +++G++ Wk++a+ + +R+ ++ XP_010104935.1 65 QWSKEELERFYDAYRMYGKD-WKKVAAVVR-NRSVEM 99 6***************99.*****.9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.232	61	114	IPR017884	SANT domain
SMART	SM00717	0.0013	62	115	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.58E-11	62	108	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-9	65	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	65	99	IPR009057	Homeodomain-like
CDD	cd00167	4.41E-7	66	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAPTKKPRVN KRYAGISWYS PVKDVGNPSK SKQRALVSVS PEKDGGNSNK PSQRKKKLSD 60 KLGPQWSKEE LERFYDAYRM YGKDWKKVAA VVRNRSVEMV DALYSMNRAY LSLPEGTASV 120 IGLIAMMTDH YNVLESSDNE QESNDASGLS RRPQKRKRGR DQVSTSKDVF KSYSSADGCL 180 SLLKRKRSDG KITCCFMYWL SQGFERENGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRPQKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010104935.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026911.1	1e-127	protein ALWAYS EARLY 2
Swissprot	Q6A331	1e-52	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	W9RY29	1e-153	W9RY29_9ROSA; Protein ALWAYS EARLY 1
STRING	XP_010104935.1	1e-154	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	4e-48	DNA binding

Link Out ? help Back to Top
Entrez Gene	21390100

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]