PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104966.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 298aa    MW: 33017.7 Da    PI: 5.4497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104966.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.47e-24122176259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr    C+++ gCp++k+vers+ dp+++++tY+ eHnh+
  XP_010104966.1 122 SDSWAWRKYGQKPIKGSPYPR----CSTSkGCPARKQVERSRVDPTMLVVTYSAEHNHP 176
                     69****************996....87777****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.106116178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-25117178IPR003657WRKY domain
SuperFamilySSF1182901.31E-20118178IPR003657WRKY domain
SMARTSM007741.0E-29121177IPR003657WRKY domain
PfamPF031063.9E-19123176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSDVPLVALS VDRGLIDQFL TTTTMDITRF TSNTKTNNKK PLFMSDRSDQ DYSNDNSPST  60
TENGSESPPS TTVFNDPMKI STSISSPKKS RRSVQKRVVS IPIKEVEGSR LKGEISGSTP  120
PSDSWAWRKY GQKPIKGSPY PRCSTSKGCP ARKQVERSRV DPTMLVVTYS AEHNHPWPAS  180
RNNHHNHHRS QSAAATSASA KLLKEEAPET QPEPEPDPES EERFAGLVGD EFVGWFGDME  240
TTSSRVLESP IFADADVAPL VFPMREEDES LFADLGELPE CSLVFRHYRG VGPEVEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-1596178679Disease resistance protein RRS1
5w3x_D6e-1596178679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026936.10.0probable WRKY transcription factor 65
SwissprotQ9LP569e-76WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLW9S0Q80.0W9S0Q8_9ROSA; Putative WRKY transcription factor 65
STRINGXP_010104966.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-61WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]