PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105178.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 531aa MW: 58879.9 Da PI: 6.096

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105178.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362	8.4e-111	156	530	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.e....lykalppsetsekn....sseelaalklfse 86 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++La rla ++ + + +++ + +++ al+l +e XP_010105178.1 156 LVQLLIACAEAVACRDKAHASVLLSELRANALVFGSSFQRVASCFVQGLADRLAMVSPlRavgfVGSTIGNPV----DyrngLEKKEEALRLVYE 246 689************************************************98333121111233332222....24445888999*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ++P ++f+h++aN aIlea+ege+ vH++D+++s +G QW L++ La+Rp+ pp +lRiT+vg ++ + +g+ L+ +A++lg+++ XP_010105178.1 247 ICPHIQFGHFVANAAILEAFEGESFVHVVDLGLSlglpHGHQWRDLIRGLAARPGHPPkRLRITAVGL----GDDRFQMIGDELELYASSLGINL 337 **************************98874444778*********877779****....99***************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ef v v +ledl+++++ ++++E+++Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl XP_010105178.1 338 EFFV-VKLNLEDLSTKDITTSEEEVIVVNSILQLHCVVKESRGALN---SVLQTIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSL 428 99.788****************************88877777...8***************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365 ++ lp+ + +r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++pl++ a a+ l k++ +gy++ ee+g+lvlgWk+r XP_010105178.1 429 DVMLPKYDTKRAKIEQFYFAEEIKNIICCEGPARFERHERVDQWRRRMSRAGFQAAPLKKVAL--AREWLGKMEaCEGYTIVEEKGCLVLGWKSR 521 ******************************************************98776..5666666666**************** PP GRAS 366 pLvsvSaWr 374 p+v++S+W+ XP_010105178.1 522 PIVAASCWK 530 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.804	130	511	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-108	156	530	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MAGNYHINGN ERTNVDQLNG LELTLSAMAW YPFPYMPTLQ SHVNGLPFSE ETREHKRMRR 60 NVSFDPESVP SNNSNIFIPY SGGSGGGSSY SSGISRSAST NSLNSPSKLQ FRDHVWTYSQ 120 RYLAAEAVEE AAAALMGDDQ DGGGSSDDGE ADEIRLVQLL IACAEAVACR DKAHASVLLS 180 ELRANALVFG SSFQRVASCF VQGLADRLAM VSPLRAVGFV GSTIGNPVDY RNGLEKKEEA 240 LRLVYEICPH IQFGHFVANA AILEAFEGES FVHVVDLGLS LGLPHGHQWR DLIRGLAARP 300 GHPPKRLRIT AVGLGDDRFQ MIGDELELYA SSLGINLEFF VVKLNLEDLS TKDITTSEEE 360 VIVVNSILQL HCVVKESRGA LNSVLQTIHE LSPKVLVLVE QDSSHNGPFF LGRFMEALHY 420 YSAIFDSLDV MLPKYDTKRA KIEQFYFAEE IKNIICCEGP ARFERHERVD QWRRRMSRAG 480 FQAAPLKKVA LAREWLGKME ACEGYTIVEE KGCLVLGWKS RPIVAASCWK C

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MAGNYHINGN ERTNVDQLNG LELTLSAMAW YPFPYMPTLQ SHVNGLPFSE ETREHKRMRR  60
NVSFDPESVP SNNSNIFIPY SGGSGGGSSY SSGISRSAST NSLNSPSKLQ FRDHVWTYSQ  120
RYLAAEAVEE AAAALMGDDQ DGGGSSDDGE ADEIRLVQLL IACAEAVACR DKAHASVLLS  180
ELRANALVFG SSFQRVASCF VQGLADRLAM VSPLRAVGFV GSTIGNPVDY RNGLEKKEEA  240
LRLVYEICPH IQFGHFVANA AILEAFEGES FVHVVDLGLS LGLPHGHQWR DLIRGLAARP  300
GHPPKRLRIT AVGLGDDRFQ MIGDELELYA SSLGINLEFF VVKLNLEDLS TKDITTSEEE  360
VIVVNSILQL HCVVKESRGA LNSVLQTIHE LSPKVLVLVE QDSSHNGPFF LGRFMEALHY  420
YSAIFDSLDV MLPKYDTKRA KIEQFYFAEE IKNIICCEGP ARFERHERVD QWRRRMSRAG  480
FQAAPLKKVA LAREWLGKME ACEGYTIVEE KGCLVLGWKS RPIVAASCWK C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-58	163	529	26	378	Protein SCARECROW
5b3h_A	2e-58	163	529	25	377	Protein SCARECROW
5b3h_D	2e-58	163	529	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105178.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105178.1	0.0	DELLA protein GAI
TrEMBL	W9RQY0	0.0	W9RQY0_9ROSA; Uncharacterized protein
STRING	XP_010105178.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-76	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	21390331