PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105275.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MIKC_MADS

Protein Properties

Length: 185aa MW: 21173.8 Da PI: 8.4365

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105275.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.2	9.2e-13	9	41	1	33
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 krien +nr +t++kRrng++K A+EL vL +a XP_010105275.1 9 KRIENITNRIITYAKRRNGLFKMAQELTVLYNA 41 79***************************9765 PP
2	K-box	44.8	5.4e-16	40	108	13	81
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 +a+++++ l+ Lk +++Lq+++ h++Ge+L++Ls+ eL L +++e++l+ R++K ++l + e+l+ XP_010105275.1 40 NAKRMEERLKELKVTNRSLQKQISHRKGESLSNLSFDELLALDREMEDALEALRTRKLRFLEQTSEDLR 108 6799*********************************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.147	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-10	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-14	1	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-11	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-13	23	38	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.7E-10	41	109	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	9.153	41	126	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MARRKIQIKR IENITNRIIT YAKRRNGLFK MAQELTVLYN AKRMEERLKE LKVTNRSLQK 60 QISHRKGESL SNLSFDELLA LDREMEDALE ALRTRKLRFL EQTSEDLRSG FNGALDDPHY 120 GVVDNGGVYD YGIPRAFASG LHRNQLALDT ETKSLLTTCS DYISEFSVNQ SNLDDQTESA 180 AHTSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027188.1	1e-122	floral homeotic protein DEFICIENS isoform X2
Swissprot	E0CPH4	3e-30	AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBL	W9S1N7	1e-133	W9S1N7_9ROSA; Floral homeotic protein APETALA 3
STRING	XP_010105275.1	1e-134	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-21	MIKC_MADS family protein

Link Out ? help Back to Top
Entrez Gene	21402358

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]