PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105352.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB_related

Protein Properties

Length: 1106aa MW: 120812 Da PI: 4.6406

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105352.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3.1e-11	903	946	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G+ +++I + ++ gRt++q+k+++ k XP_010105352.1 903 RARWSKQDTELFYEAVRQFGPV-FSLIEQLFP-GRTREQVKLKFKK 946 569***************66.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	7.9E-25	896	980	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-6	899	946	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.32E-8	901	946	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-9	902	950	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-7	905	946	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1106 aa Download sequence Send to blast
MDPFDDFFGS APTHARAGGR FQPKVKHRPK KQTVASAPSV VPSDTKERTG GLFSPTLDAG 60 KSVLLTAVVD DRLNIQNGVE ESLKKHEDSV SGVPEGVTKD CGSVDAFLQK RGLETTSGVP 120 EGGDGHSGSQ APESEVDLVG LDVDHFIGSG VEPASISVRV SSEQDISASA PSTLPDSIEE 180 KLVTLPTNGL DTGASVQPAA IGKSSTEVDS MQFDVDLFDD ILSESTPSST RAGHKFRTKI 240 KPQAQKGATR GVASSLEKTI ESPASPATLP IVDSIQSVQS IEPASPATLP IVDSIQSVQS 300 IDTGNSTPTE RIDSSLATSE ILGSREPPEN GGYPCSNDSV PDNTRNLEVG IHSQPHATDA 360 LQSKVSVPDA SEDWHSSFGK SLGENVDLFS GLEYLDDFIT QTTNGTGSEA SKSQCKVDMD 420 VQHGDKFLTP FSINTDLGGS TSPSGMATHS KENFSAPADG SFESSAFTIC DVAPSQTLSD 480 FHTTNDPVTF SETVVSDKHE EVHINNGKPE TKVSGTSFDF ETCDATVPSG KRAGKFQPKP 540 KLGKGKQKPS TSNPQTQVRS SLPSEDAHFV PFDNGYAHGD SISEFLREDI LDCSSARFSD 600 PSAIAPTPEI HGDTEPTNLT EATQLDDTVL GNMHSEDDPG VLGKGGKSRM GKDCTEPKYN 660 RKNEKSSTTS QGVEGGKSSM QLRKRRRRLV DEPFDEAYDV NDSTCERPTT SNRDEDEDND 720 DEYRVDSMPR KRETPRKVKE PVPGNEKPGR KRKSTKEAYN ESTKEPPKKF SHSSRRSKRR 780 VEKALLDTPE DEIDPQRLPI KDLILLAEHR ERIAIKDAAK LKTPQSYQRC LNSLVEFPFL 840 LAPYFQLSYV LLRAENSFCE DASYNEETFV SEQGQYSDDD QPSYKVQPSS LYNHQSFMKK 900 TPRARWSKQD TELFYEAVRQ FGPVFSLIEQ LFPGRTREQV KLKFKKEGRQ HPLRLSEAIT 960 NRRKDHSHFL SVIQRLQQAA AQAKQESDEN ESIAVTGEEE VEEPADDTNT RERRVADAGN 1020 GSGDMSRGGI SGPGDELAGQ GDELANKELV LGCFNSRATM EEGETKSEWD NEAAKDQEAD 1080 VAEADNSPLK FDENDDDPDR WGQYIY

Sequence ? help Back to Top

Protein Sequence Length: 1106 aa Download sequence Send to blast

MDPFDDFFGS APTHARAGGR FQPKVKHRPK KQTVASAPSV VPSDTKERTG GLFSPTLDAG  60
KSVLLTAVVD DRLNIQNGVE ESLKKHEDSV SGVPEGVTKD CGSVDAFLQK RGLETTSGVP  120
EGGDGHSGSQ APESEVDLVG LDVDHFIGSG VEPASISVRV SSEQDISASA PSTLPDSIEE  180
KLVTLPTNGL DTGASVQPAA IGKSSTEVDS MQFDVDLFDD ILSESTPSST RAGHKFRTKI  240
KPQAQKGATR GVASSLEKTI ESPASPATLP IVDSIQSVQS IEPASPATLP IVDSIQSVQS  300
IDTGNSTPTE RIDSSLATSE ILGSREPPEN GGYPCSNDSV PDNTRNLEVG IHSQPHATDA  360
LQSKVSVPDA SEDWHSSFGK SLGENVDLFS GLEYLDDFIT QTTNGTGSEA SKSQCKVDMD  420
VQHGDKFLTP FSINTDLGGS TSPSGMATHS KENFSAPADG SFESSAFTIC DVAPSQTLSD  480
FHTTNDPVTF SETVVSDKHE EVHINNGKPE TKVSGTSFDF ETCDATVPSG KRAGKFQPKP  540
KLGKGKQKPS TSNPQTQVRS SLPSEDAHFV PFDNGYAHGD SISEFLREDI LDCSSARFSD  600
PSAIAPTPEI HGDTEPTNLT EATQLDDTVL GNMHSEDDPG VLGKGGKSRM GKDCTEPKYN  660
RKNEKSSTTS QGVEGGKSSM QLRKRRRRLV DEPFDEAYDV NDSTCERPTT SNRDEDEDND  720
DEYRVDSMPR KRETPRKVKE PVPGNEKPGR KRKSTKEAYN ESTKEPPKKF SHSSRRSKRR  780
VEKALLDTPE DEIDPQRLPI KDLILLAEHR ERIAIKDAAK LKTPQSYQRC LNSLVEFPFL  840
LAPYFQLSYV LLRAENSFCE DASYNEETFV SEQGQYSDDD QPSYKVQPSS LYNHQSFMKK  900
TPRARWSKQD TELFYEAVRQ FGPVFSLIEQ LFPGRTREQV KLKFKKEGRQ HPLRLSEAIT  960
NRRKDHSHFL SVIQRLQQAA AQAKQESDEN ESIAVTGEEE VEEPADDTNT RERRVADAGN  1020
GSGDMSRGGI SGPGDELAGQ GDELANKELV LGCFNSRATM EEGETKSEWD NEAAKDQEAD  1080
VAEADNSPLK FDENDDDPDR WGQYIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	681	688	LRKRRRRL
2	682	686	RKRRR
3	683	688	KRRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105352.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027250.1	0.0	uncharacterized protein LOC21392104
TrEMBL	W9RZ72	0.0	W9RZ72_9ROSA; Transcription factor TFIIIB component B
STRING	XP_010105352.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-33	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	21392104