PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105364.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 316aa    MW: 34554.5 Da    PI: 7.3754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105364.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.1e-11865348
                     SS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eE++ + +a++++ ++             +W++Ia++++  ++ +++k ++q++l
   XP_010105364.1  8 SWSKEEEKAFENAIAMHWKEkqegeeeeedskeQWDKIASMVP-SKSMEELKRHFQMLL 65
                     7*****************99***********************.************986 PP
2Myb_DNA-binding38.82.1e-12143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_010105364.1 143 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 187
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.609469IPR017884SANT domain
SMARTSM007171.1E-8567IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-5666IPR009057Homeodomain-like
PfamPF002491.1E-8765IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-8771IPR009057Homeodomain-like
CDDcd001671.98E-61165No hitNo description
PROSITE profilePS5129416.873136192IPR017930Myb domain
SuperFamilySSF466899.33E-17138193IPR009057Homeodomain-like
SMARTSM007172.3E-10140190IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.5E-17140190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-11141186IPR009057Homeodomain-like
PfamPF002498.0E-11143187IPR001005SANT/Myb domain
CDDcd001671.15E-9143188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSTTTTSWS KEEEKAFENA IAMHWKEKQE GEEEEEDSKE QWDKIASMVP SKSMEELKRH  60
FQMLLDDVNA IEAGHIPVPN YAVDDNGHNP SKDSHHVVSG SEKRLNGNSS AGHGSGFSSG  120
LAGHDGGGKG GSRAEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV  180
ASHAQKYFIR LNSVNRDRRR SSIHDITSVA NGEVSPHQAP PITGQQANTN QSSVPAMGAP  240
QLVKHRGQPH VPGIGMYGAP MGHPVAAPPG HMGSAVGTPV MLPPGHHPHP HHHPHHHPPP  300
YIVPVAYPMA PPTMHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105364.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105364.10.0transcription factor MYBS1
SwissprotB8A9B23e-81MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH593e-81MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLW9RR200.0W9RR20_9ROSA; Transcription factor
STRINGXP_010105364.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-71MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]