PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105377.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 360aa    MW: 40347.6 Da    PI: 9.3945
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105377.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.41.9e-2853155398
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89 
                     g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WL+ + k  i++l+ ++ ++     +  ++++++++++++       +
  XP_010105377.1  53 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDRLGLSQPSKVIDWLIDATKLDIDKLPPLQIPQG-VLgQFLHHHNNHDHHHHQhlhlldpH 146
                     78*************************************************************44444.33322222222222222223354432 PP

             TCP  90 aaksaaksk 98 
                     + + +++++
  XP_010105377.1 147 HDQVKTNEQ 155
                     222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-2654148IPR005333Transcription factor, TCP
PROSITE profilePS5136928.45754112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MITSPKEKDF PAAKRDDPAE DKKLYKAPSA SSRQWSSAGF RNPRIVRVSR TFGGKDRHSK  60
VCTVRGLRDR RIRLSVPTAV QLYDLQDRLG LSQPSKVIDW LIDATKLDID KLPPLQIPQG  120
VLGQFLHHHN NHDHHHHQHL HLLDPHHDQV KTNEQDQFAQ KLFGVPSSYM NHYQNYTDQT  180
SFYDQGIALP GQYFDGISGH NNLVMSTTNS STTSSFNSGS IQSVSQLFFC APPPSNSTTT  240
TSFFTSTPYP SYMSSTTQYH ENPHDTIRPQ MINNHIQFMS ANSSTISSTS ASSSSSSSQQ  300
FHILNNSLMA SLHTTSVNNN NNNNNPPLIK SFPAILHPRL LAQSSAYENR QEKDRSTTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1959113155Putative transcription factor PCF6
5zkt_B7e-1959113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105377.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105377.10.0transcription factor TCP5
RefseqXP_024027284.10.0transcription factor TCP5
TrEMBLW9RZ980.0W9RZ98_9ROSA; Uncharacterized protein
STRINGXP_010105377.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5