PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105431.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 291aa MW: 32049.6 Da PI: 9.4418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105431.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.2e-40	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+ +la XP_010105431.1 12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRRMVELQRDLA 106 6*********************************************************************************************9 PP DUF260 96 llkee 100 ++++ XP_010105431.1 107 IARAR 111 98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.463	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MKGSHEPRSS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRRMVE LQRDLAIARA RLARFAANSS 120 SLCSSSSSSS SSVSNYSILD GRVTEVGLSG IPCAGFGDAF SQNPLEFGQN GPIENPKTSF 180 RECLLGTTSY KFRNRMFNET IIDEQTYYPI TPLSGTSVDA NFTRDRGLDT KMIAQFSTTL 240 GNNTPNTQTK PTSGLMVLLS EFKPKVVLVH VLKANPKIRQ AIVSHTELRL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105431.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP903733	1e-69	KP903733.1 Ficus hirta clone FH35 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027330.1	1e-122	LOB domain-containing protein 21
TrEMBL	W9SFX1	0.0	W9SFX1_9ROSA; Uncharacterized protein
STRING	XP_010105431.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-58	LOB domain-containing protein 21

Link Out ? help Back to Top
Entrez Gene	21393214