PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105436.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB

Protein Properties

Length: 247aa MW: 26955.4 Da PI: 8.6572

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105436.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60	5.2e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I++ ++ gR++k+c++rw + XP_010105436.1 13 KGSWSPQEDAALIKLVEQHGPRNWSLISHGIP-GRSGKSCRLRWCNQ 58 799***************************.*********985 PP
2	Myb_DNA-binding	50.8	3.9e-16	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a+ +G++ W+tIar ++ gRt++ +k++w++ XP_010105436.1 67 PFTPAEDAIIIRAHSIHGNK-WATIARFLP-GRTDNGIKNHWNST 109 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.253	8	63	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-31	11	106	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	12	61	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-18	13	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-24	14	66	IPR009057	Homeodomain-like
CDD	cd00167	4.13E-16	15	57	No hit	No description
SMART	SM00717	1.8E-13	64	112	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.374	64	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-22	67	113	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-11	67	110	No hit	No description
Pfam	PF00249	1.8E-13	67	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MTSGMMNGGD RIKGSWSPQE DAALIKLVEQ HGPRNWSLIS HGIPGRSGKS CRLRWCNQLC 60 PSVQHRPFTP AEDAIIIRAH SIHGNKWATI ARFLPGRTDN GIKNHWNSTL RRRRSGATEN 120 PSSPSSPSSS SDVAAAEEEN SEPVLKRQRI GASPERNRLD GIETTLTLSL PGDKTVPVPA 180 AEEMPVSDVG LKKEEGERGA VEMEEKCLIA LMQRMVAQEV RNYIDGLRAK GALGFGLQSA 240 AQNGPYD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-36	12	113	3	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105436.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105436.2	0.0	transcription factor MYB73
TrEMBL	W9SFX5	0.0	W9SFX5_9ROSA; Transcription factor
STRING	XP_010105436.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-52	myb domain protein 73

Link Out ? help Back to Top
Entrez Gene	21393219