PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105468.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 282aa    MW: 32118.1 Da    PI: 6.6823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105468.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.3e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fss+g++  +s
  XP_010105468.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSSSGRVSLFS 58
                    79*******************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30278IPR002100Transcription factor, MADS-box
CDDcd002654.11E-38275No hitNo description
PRINTSPR004042.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSS SGRVSLFSGN  60
KSIEEILARY VNLPDHDRGR IFEGDPSEIT TLNEAEYREK ILEETLKTVC IRKQVLEKYN  120
SFGTHFTTQV HLPPETANVD ELVAGAISPQ NILDWLPQRD PQIQILNFLD SNGLLHMRDE  180
VQRGDEILPP PSTLHRQNIV DDHVTSRSGL ENDMNNNAQD QVRPHLGQAL DANLSPWTEF  240
YPTGDFSSRT ARRTRTPSII YASVRAPRSL LTPNHNQHDH ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18175174MEF2 CHIMERA
6byy_B4e-18175174MEF2 CHIMERA
6byy_C4e-18175174MEF2 CHIMERA
6byy_D4e-18175174MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753223e-52AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence.
GenBankGU1429133e-52GU142913.1 Hevea brasiliensis MADS-box transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884985.11e-108agamous-like MADS-box protein AGL104 isoform X1
RefseqXP_015900469.11e-108agamous-like MADS-box protein AGL104 isoform X1
TrEMBLW9SG060.0W9SG06_9ROSA; MADS-box transcription factor 3
STRINGXP_010105468.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-37AGAMOUS-like 66