 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010105533.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 281aa MW: 31153.8 Da PI: 10.1664 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010105533.1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 350.3 | 4.2e-107 | 1 | 281 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k+ r+ + + + ++a+++rd m++ rd+++++ ++k+l
XP_010105533.1 1 MDDDALNMRNWGYYEPT--FKGHLGLQLMSSMAERDTKPymsgRDPTTVMVSANGAFHPRDcvvsdapvpMNY-VRDSWVNQ--------RDKFL 84
9***9999*******99..************************999999************************.9******9........789** PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
++l+ a+p++ vl++t+ ++slq+ l+++ + r+e + +ee + ++ke+ +kkrq + pk++k k+++k +k++
XP_010105533.1 85 NMLP-------ANPNYAPVLPETSGAHSLQM-----LQPPETT-RDE---RVGRVEEPVIVNKESGPSKKRQGGGAPKAPKVKRPRK----PKDN 159
***9.......4688999*************.....4444333.333...35677788888999999999999*******9999999....3344 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
++++ +r+k kks+++v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkrrgaRiagrKmSqgafkk+LekL
XP_010105533.1 160 TNPAV--PRVKPAKKSLEVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKL 252
44444..789************************************************************************************* PP
GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aaeGy+++np+DL++hWA+HGtnkfvtir
XP_010105533.1 253 AAEGYNFANPIDLRTHWARHGTNKFVTIR 281
****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPTFKG HLGLQLMSSM AERDTKPYMS GRDPTTVMVS ANGAFHPRDC 60
VVSDAPVPMN YVRDSWVNQR DKFLNMLPAN PNYAPVLPET SGAHSLQMLQ PPETTRDERV 120
GRVEEPVIVN KESGPSKKRQ GGGAPKAPKV KRPRKPKDNT NPAVPRVKPA KKSLEVVING 180
IDMDISGIPI PVCSCTGTPQ QCYRWGCGGW QSACCTTNVS VYPLPMSTKR RGARIAGRKM 240
SQGAFKKVLE KLAAEGYNFA NPIDLRTHWA RHGTNKFVTI R
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
