PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105670.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 844aa    MW: 93201.4 Da    PI: 6.1059
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105670.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.16.8e-35135211177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv+ C ad+ e+k yhrrh+vC  +++a +v+++g+++r+CqqC++fh  s+fDe+krsCrr+L++hn+rrr+k 
  XP_010105670.1 135 RCQVPTCGADIRELKGYHRRHRVCLRCANAGTVVIEGVNKRYCQQCGKFHVSSDFDEGKRSCRRKLERHNNRRRRKP 211
                     6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-26130197IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.65133210IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-32134213IPR004333Transcription factor, SBP-box
PfamPF031104.9E-25136210IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEGASSPSSD HARDSEMEVG HHAPSVHDDA PPNVWDWGDL LDFAVDADLS INWDSGPAEP  60
PPPMEVPAES PVREVLDPGR IRKRDPRMVC SNFLAGRVPC ACPEMDEKMM EMEEDEAGHG  120
KKRARTARAQ PGAARCQVPT CGADIRELKG YHRRHRVCLR CANAGTVVIE GVNKRYCQQC  180
GKFHVSSDFD EGKRSCRRKL ERHNNRRRRK PVDSKGAIEK ESQGDAQSED ASGDGPDGEG  240
GKDCSQFSSQ MVQKETWVDS EAGHASPLSP LRTAPDSKDA NSDGFELINS GETQVDGGKH  300
NSRRGLSPSY YENKSAYSSV CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ANMPVELEGY  360
IRPGCIILTV FVAMPRFMWM KLSEDPVSYI HNFVVAPGGM LSGRGNILVY VNNMVFQVVK  420
GGNSVIKAKV DVGVPRLHYV HPTCFEAGKP MEFVACGSNL FQPKLRFLLS FSGKYLAYDY  480
SSASSRFQTA SNLDHQLYRI QVPHTEADCF GPVFIEVENE AGLSNFIPVL IGDKETCSEM  540
KVIQQRLDES LLKDGPCVSP IASLSNSCDA SSLRQSAITE LILDVAWLLK KPGSEGFQQI  600
LTASQVQRLN RLLSLLISVE STTILERILQ NMKSVMDKLK LTDECSGISD ADLRLLQKYM  660
DYAHQLSYQK LQKDGSSDLP SRNLPLKEDQ CCCPDDACSD VSFLCQDTKI MVNGKLGLVA  720
SSTYSKTSET IRLLTNETFS EANLIKEWPS DASCHTASGE LMSSRNNSVP TTSDIDKLPR  780
GFNHVISALS IATERINFLE AVIAASSKCI SCTAVLDVSW DVRSLPLPNS DLPTALRLFS  840
GSDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-40134216486squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196208RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027509.10.0squamosa promoter-binding-like protein 7
TrEMBLW9SGM90.0W9SGM9_9ROSA; Squamosa promoter-binding-like protein 7
STRINGXP_010105670.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.30.0squamosa promoter binding protein-like 7