PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105698.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family FAR1
Protein Properties Length: 790aa    MW: 91408.7 Da    PI: 8.0812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105698.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-2071145189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY++YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a +kv+++++gkw v+ + ++HnH+l
  XP_010105698.1  71 EFYSSYATRVGFKIRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPALIKVQRRDSGKWIVDLFLKDHNHDL 145
                     6***************************************876..............589***************************98 PP
2FAR165.21.8e-20227303191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA + GF++r+ +  +sk +g+it+r+fvCskeg+++++              r gC a +++k++++g+w+v++l++ HnHel p
  XP_010105698.1 227 QFYQAYAANKGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRQETGRWVVDRLQKGHNHELEP 303
                     6***************************************9994..............789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1671145IPR004330FAR1 DNA binding domain
PfamPF031014.5E-16227303IPR004330FAR1 DNA binding domain
PfamPF105511.7E-27402494IPR018289MULE transposase domain
PROSITE profilePS5096610.2674712IPR007527Zinc finger, SWIM-type
PfamPF044347.4E-7682709IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-5687714IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MVVEPSSSHF TDIRSSGTDP CSRGFGNTVV VKAYPVGMVP AMNNVNVEDE GDSRLEPYVG  60
LEFDSADEAR EFYSSYATRV GFKIRTGQLY RSRTDGTVSS RRFVCSKEGF QLNSRTGCPA  120
LIKVQRRDSG KWIVDLFLKD HNHDLGLMEE SPPTSQQRKA PLETKSVVKV SSRLRTKTKL  180
IEEVEDGRPS ASGIINIKRL KRDGDEMLST VEPFSGLEFN SANEAYQFYQ AYAANKGFRI  240
RIGQLFRSKL DGSITSRRFV CSKEGFQHPS RLGCGAFMRI KRQETGRWVV DRLQKGHNHE  300
LEPQLELHKK SLSASKKLLE EESGGLDNED IFQITTGNVV KRNRENHIGN DWYRVLFEYF  360
QTRQAEDTSF FYAVEVDHGS CMSIFWADGR SRFSASQFGD AIILDTSYRK SIYLVPFATF  420
IGINHHRQPV LLACALIADE SEEAFTWLFQ TWLKAMSGLH PLSIIADQDK AIQQAIKKVF  480
PRAHHRFSLW QLKAKEREYL NLIEPSIGYE YEKCIYQIQT VDEFETAWNM LINRYGLIEN  540
VWLKEMYEKR ESWVPAYLRN TFFAGIPLNE NIESFFGTFL NAQTALVEFV SRYERGIERR  600
REEERKEDFN TYNLQTFLQT KEPVEEQCRR LYTLAVFKIF QKELLQSYGY VGFKVYEEGA  660
ITRYLVRKGG NDNEKCLVTF NASNITIGCS CEMFEFEGVL CRHVLRVFQI LDVRELPSRY  720
ILHRWTRNAE FGTVHDFEST RSSQELKALM VWSLRETASK YIEAGAASFE KHKLAYEIMR  780
EGGRKLCWQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105698.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105698.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLW9RS140.0W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRINGXP_010105698.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]