PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105966.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 324aa    MW: 36007.4 Da    PI: 6.2393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105966.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k   g+ +W++ ++  g+ R++k+c++rw +yl
   XP_010105966.1 14 KGPWTAEEDEILVNYIKNNNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     79***************998888**********99************97 PP
2Myb_DNA-binding521.6e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_010105966.1  68 RGPFTQEEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-23565IPR009057Homeodomain-like
PROSITE profilePS5129413.741962IPR017930Myb domain
SuperFamilySSF466891.91E-2811109IPR009057Homeodomain-like
SMARTSM007176.9E-101364IPR001005SANT/Myb domain
PfamPF002496.3E-131462IPR001005SANT/Myb domain
CDDcd001672.36E-81662No hitNo description
PROSITE profilePS5129425.83263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2666117IPR009057Homeodomain-like
SMARTSM007172.3E-1567115IPR001005SANT/Myb domain
PfamPF002491.3E-1568113IPR001005SANT/Myb domain
CDDcd001673.09E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRTPCCDKR GLKKGPWTAE EDEILVNYIK NNNGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTQEEEKLII QLHGMLGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLCM  120
GIDPLTHEPF SSNHYPTTKS CPPSPSTRHM AQWESARLEA EARLSRESSL FGPQPHTKAN  180
SDFFLRLWNS EVGDSFRKLS KFGEKIECHS SPISQASSST KCGSVSALTT EVDPNTAGLE  240
TTVGSQVEEM EYCKSCKSNG EDFMAAGSDS SSSNDMEDSS DTALQLLLDF PINNDMSFLE  300
ENCSDYGAAA DHAMLSESSF ICPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295821e-137KP229582.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB26) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105966.10.0transcription factor MYB41
SwissprotQ9M2D91e-129MYB17_ARATH; Transcription factor MYB17
TrEMBLW9S0V50.0W9S0V5_9ROSA; Protein ODORANT1
STRINGXP_010105966.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-121myb domain protein 17