PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010106018.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 516aa MW: 53503.1 Da PI: 8.7985

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010106018.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010106018.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_010106018.1 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.81E-7	67	90	No hit	No description
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.3E-5	68	90	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.0E-5	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.81E-7	139	165	No hit	No description
SMART	SM00355	77	144	164	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.538	144	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MGELENSSPM AVSTASADAS LSSSGYQTTA VPAAAAPPKK KRNLPGMPDP DAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPEPSCVHHN 120 PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE RDSFITHRAF 180 CDALAEESAR SQTLAVSSEG NNPNPNAKAV VASPPPPPLT PSTSVVSPAL SIQSSELPEN 240 AIGLSPPTPA TTCLITTSTT ITSCSNSNGS TTSTVFASIF APSSTVVAQP PPQTSSAASI 300 SSFPNLIPTL GRSHCTSTST STIVPTVPTI EPTSLSLSTS LYLSNNGGSS LFPTPDQHDQ 360 HHHFAQPPQP PAMSATALLQ KAAQMGAAAS NTSLLFGLTT SFSSGKELGS NASQWNGQVK 420 AENGVSAAAA GLGLGLPENS GLTDLVIGPS SAFGSQAPMT RDLLGLSIGG GGGASTGGLS 480 ALLNSFGGGS GFDITAPSSY GGEGPPERKP NGPALL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MGELENSSPM AVSTASADAS LSSSGYQTTA VPAAAAPPKK KRNLPGMPDP DAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPEPSCVHHN  120
PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE RDSFITHRAF  180
CDALAEESAR SQTLAVSSEG NNPNPNAKAV VASPPPPPLT PSTSVVSPAL SIQSSELPEN  240
AIGLSPPTPA TTCLITTSTT ITSCSNSNGS TTSTVFASIF APSSTVVAQP PPQTSSAASI  300
SSFPNLIPTL GRSHCTSTST STIVPTVPTI EPTSLSLSTS LYLSNNGGSS LFPTPDQHDQ  360
HHHFAQPPQP PAMSATALLQ KAAQMGAAAS NTSLLFGLTT SFSSGKELGS NASQWNGQVK  420
AENGVSAAAA GLGLGLPENS GLTDLVIGPS SAFGSQAPMT RDLLGLSIGG GGGASTGGLS  480
ALLNSFGGGS GFDITAPSSY GGEGPPERKP NGPALL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-24	140	195	3	69	Zinc finger protein JACKDAW
5b3h_F	2e-24	140	195	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010106018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027750.1	0.0	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-124	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	W9S103	0.0	W9S103_9ROSA; Zinc finger protein MAGPIE
STRING	XP_010106018.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-100	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	21404058

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]