PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106095.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 411aa    MW: 44235.7 Da    PI: 6.8885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106095.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-173883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
   XP_010106095.1 38 KGPWSPEEDAVLSRLVGKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 83
                     79******************************.***********985 PP
2Myb_DNA-binding55.31.5e-1790134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_010106095.1  90 RKPFSDEEDRIIVTAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 134
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9733384IPR017930Myb domain
SuperFamilySSF466892.3E-3035131IPR009057Homeodomain-like
SMARTSM007171.5E-143786IPR001005SANT/Myb domain
PfamPF002495.5E-163883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-263991IPR009057Homeodomain-like
CDDcd001675.27E-144082No hitNo description
PROSITE profilePS5129426.93885139IPR017930Myb domain
SMARTSM007174.6E-1789137IPR001005SANT/Myb domain
PfamPF002496.2E-1590134IPR001005SANT/Myb domain
CDDcd001679.59E-1392135No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2492138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTVPNDAVSA DGDRAGELEL SGGEGSGGGR GVGVGKVKGP WSPEEDAVLS RLVGKFGARN  60
WSLIARGIPG RSGKSCRLRW CNQLDPGVKR KPFSDEEDRI IVTAHAIHGN KWAAIARLLP  120
GRTDNAIKNH WNSTLKRKCA ELGGLKPAPG GMTLDGGLDM TKASSEETLS AGNMNSLRNS  180
EGREISVDNR SSQYENSAQV EGCIAEEDHH NLVSLAEHHP TVSRPVGRIS AFSVYNPLRG  240
LSNSSVFSRT VLTPGPLCQG SKPELGACKL FEEFCSEPMV PLRCGHGCCV NSRIRQSHSS  300
LLGPEFLEYE ESPSFSSHEL ISIATDLNNI AWIKSGLETT GARAPNDAAI LETSRGAVTT  360
SQVGILEQNK RNDHFRFEEG QNKLMGMMTD ALSSQMPRRS FAMPTEVEGL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-41371386107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106095.10.0transcription factor MYB25
TrEMBLW9S1780.0W9S178_9ROSA; Transcription factor
STRINGXP_010106095.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-98myb domain protein 109