PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010106120.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 469aa MW: 51160.8 Da PI: 6.6008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010106120.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.3e-07	363	403	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_010106120.1 363 ARERRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 403 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.608	354	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-13	360	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-12	360	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	362	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	364	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-4	376	408	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MEGDLYSTAQ AVTNTSSPLW GNQNQRDIDE SFFMSSSRSE LQKAAHNHSI PSNAVSVDVI 60 SNLSFSSQRQ ESTISLAAKS GSAATTTWPG HEALTSELIS SCPPNSCLVS RPNYVMMSPF 120 SGLMTDYGNN NIVQSSQVVN GKAPVQTTCS LESLDCLLSA TNSNTDTTSV EDDDGISMIF 180 SDCRNLWNTN IVAAASGAVS SGESENNVVV SRNNKEAYNR AASNINNEVD ESIATVFYTS 240 KCSTKRSSSY FNLLHTDTIN NSSPSSEGGF KLITENIPKP KKARSEKQRQ VLSSSNINFQ 300 QPSNNSSMSS SVEHEPDPEA IAQMKEMMYR AAAFRPVNLG LEIVEKPKRK NVKISNDPQT 360 VAARERRERI SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ETLGQKIDSM 420 NCPPTNIAFS FNPSFPMQTT TTTTTTNHVP SAVVVPPLQN PTHAHHYQS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MEGDLYSTAQ AVTNTSSPLW GNQNQRDIDE SFFMSSSRSE LQKAAHNHSI PSNAVSVDVI  60
SNLSFSSQRQ ESTISLAAKS GSAATTTWPG HEALTSELIS SCPPNSCLVS RPNYVMMSPF  120
SGLMTDYGNN NIVQSSQVVN GKAPVQTTCS LESLDCLLSA TNSNTDTTSV EDDDGISMIF  180
SDCRNLWNTN IVAAASGAVS SGESENNVVV SRNNKEAYNR AASNINNEVD ESIATVFYTS  240
KCSTKRSSSY FNLLHTDTIN NSSPSSEGGF KLITENIPKP KKARSEKQRQ VLSSSNINFQ  300
QPSNNSSMSS SVEHEPDPEA IAQMKEMMYR AAAFRPVNLG LEIVEKPKRK NVKISNDPQT  360
VAARERRERI SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ETLGQKIDSM  420
NCPPTNIAFS FNPSFPMQTT TTTTTTNHVP SAVVVPPLQN PTHAHHYQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010106120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106120.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	3e-92	BH087_ARATH; Transcription factor bHLH87
TrEMBL	W9S199	0.0	W9S199_9ROSA; Uncharacterized protein
STRING	XP_010106120.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-75	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21386667

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]