PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106133.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Dof
Protein Properties Length: 323aa    MW: 35589.4 Da    PI: 8.4766
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106133.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3949110263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  XP_010106133.1  49 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 110
                     7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3142107IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3351107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13453107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPLEEIVC TNTAICPNKP PNTNNNNNNL ERKLARPQKE QALNCPRCNS  60
TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRSSS SSPSPSSSKI  120
TTTRLPDLVQ PSTTNQPPQK MMINQGQDLN LGFPPTTTTS SSQDFRNISD FVQLPNINEN  180
NTTNKNHNNN IISTTSTTSP STTSHLSALE LLTGLTSRGF NSFMPMPIPD PNTVGFSLTE  240
FKPSLNFSLD GLGSNSTTNG GFASLQNHVQ ENTSGRLLFP FEDLKQVSST NTTTAGIIHE  300
QNNIKEQEDS SGYWTGMLGG GSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022862e-81KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106133.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP82e-72DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLW9RTF50.0W9RTF5_9ROSA; Dof zinc finger protein
STRINGXP_010106133.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.19e-68Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]