PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106165.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 1035aa    MW: 113738 Da    PI: 6.5817
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106165.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.9e-24249350199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010106165.1 249 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 339
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010106165.1 340 KNQLLLGIRRA 350
                     9999****997 PP
2Auxin_resp121.46.8e-40375458183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010106165.1 375 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 458
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF476995.29E-2027118IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.108.7E-2428118No hitNo description
CDDcd019604.48E-3228116No hitNo description
PRINTSPR003821.2E-162945IPR000528Plant lipid transfer protein/Par allergen
SMARTSM004999.4E-730115IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PfamPF002343.7E-730107IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003821.2E-165064IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.2E-167186IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.2E-1688105IPR000528Plant lipid transfer protein/Par allergen
PROSITE patternPS00597097118IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.2E-16106117IPR000528Plant lipid transfer protein/Par allergen
SuperFamilySSF1019363.79E-49234378IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-42242364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-21248349No hitNo description
SMARTSM010191.8E-24249351IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548249351IPR003340B3 DNA binding domain
PfamPF023626.3E-22249350IPR003340B3 DNA binding domain
PfamPF065079.5E-35375458IPR010525Auxin response factor
PfamPF023099.2E-7894982IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-8895974No hitNo description
PROSITE profilePS5174525.328900984IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006869Biological Processlipid transport
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MKKASAVAVM LVVVVMTMVF MAEPGQAITC AQVDIALRPC LDYLKGTTGQ PPVECCNGVA  60
SIKQNTPTKA DRQAACQCVK RAAESLAGLS DDAAKNLPVR CNVQISVPIS RNVNCNKMRL  120
SSSSSSSGFN HQAQDGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK  180
EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD VYLLPAELGT  240
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  300
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS  360
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  420
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  480
LTTFPMYPSP FPLRLKRPWP SGLPSFHALK DGDMSINSPL MWLQGGIGDQ GLQSLNFQGL  540
GLAPWMQPRL DASMAGVQPD VYQAMAAAAL QEMRTVDPSK STPQSLLPFQ QSQNVSNGPA  600
ALLQRQLLSQ SQPQSSFLQS FQENQAPAQA QLMQQQLQRY HPYNDHRQQQ HQQLQQQQQQ  660
QQPQQQLQPS QQLHQLSVQQ QIPNVMSALP NFSSGTQSQS PSLQAIPSQC QQPTFPDPVG  720
NPISSSDVSQ IHSILGSLSQ NGGSQLLNLS GSNSVIASSS LLAKQIAVEP QIPSGTAQSV  780
LPQVEQLAPP QSNVSDLTSL PPFPGREYSA YQGATDPQSN LLFGVNIDSS SLMMQNGMST  840
LRNMGSENDS LSMPFGSSNY SSATGTDFPL NSDMTTSSCV DESGFLQSSE NGDQVNPPTR  900
TFVKVHKSGS FGRSLDISKF SSYDELRSEL ARMFGLEGQL EDPQRSGWQL VFVDRENDVL  960
LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EGLSPASSVP SHKLSNSNNA CDDYISRQDM  1020
RNSSNGIPSM GDLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-16513447943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0726360.0KR072636.1 Boehmeria nivea auxin response factor (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027835.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010106165.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]