PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106176.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 95aa    MW: 10739 Da    PI: 9.0646
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106176.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind86.92.7e-272085267
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE--- CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkd 67
                    Fl+k+y++++d+++++++sws+++nsfvv++   fa+++Lpk+Fkh+nf+SFvRQLn+Yg k++++
  XP_010106176.1 20 FLSKTYDMVDDPSTDSIVSWSDHNNSFVVWNAPLFARDLLPKFFKHNNFSSFVRQLNTYGRKELSK 85
                    9***********************************************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-301084IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-261688IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-261882IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-232083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEVGRDAAST TNSGPSPPPF LSKTYDMVDD PSTDSIVSWS DHNNSFVVWN APLFARDLLP  60
KFFKHNNFSS FVRQLNTYGR KELSKALRLA SQLSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-211831492Heat shock factor protein 1
5d5v_B8e-211831492Heat shock factor protein 1
5d5v_D8e-211831492Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106176.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027877.12e-51heat stress transcription factor A-1a isoform X1
RefseqXP_024027878.12e-51heat stress transcription factor A-1a isoform X2
SwissprotP411512e-32HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLW9S4623e-63W9S462_9ROSA; Uncharacterized protein
STRINGXP_010106176.15e-64(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.17e-35heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]