PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106183.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 159aa    MW: 17502.5 Da    PI: 9.4924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106183.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP122.32.1e-3868144278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cq+ +  ad s+ak+ hrrhkvCevhskapvvlv+gl+qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++ 
  XP_010106183.1  68 CQAGRGGADPSDAKRSHRRHKVCEVHSKAPVVLVAGLRQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRKSSV 144
                     9*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.7E-544155IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.4E-3063129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.24865142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.45E-3466146IPR004333Transcription factor, SBP-box
PfamPF031101.2E-2868141IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEAKWVDRDI IDQDQLQAEN SINADTEEEE GGVGESEKEK KKKKAVPPPL GRLPRGGSSG  60
GAVSPLSCQA GRGGADPSDA KRSHRRHKVC EVHSKAPVVL VAGLRQRFCQ QCSRFHEVSE  120
FDEAKRSCRR RLAGHNERRR KSSVESCHGE SSSTPKTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-3557141184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106183.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106183.11e-112squamosa promoter-binding protein 1
SwissprotQ6Z4619e-39SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLW9RTQ11e-111W9RTQ1_9ROSA; Squamosa promoter-binding-like protein
STRINGXP_010106183.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-34squamosa promoter binding protein-like 4