PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010106242.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 261aa MW: 28747.2 Da PI: 5.299

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010106242.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.8	5.7e-41	27	125	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++k+l++ ++++am++++++++ara+dPv G++++i +lqqq+e +kael+ XP_010106242.1 27 ACAACKYQRRKCAPDCVLAPYFPHDNQRQFLNAHKLFGVSNITKIIKNLDPRTKDEAMRTIIFQSDARASDPVGGCYRIICDLQQQIEYAKAELN 121 7*********************************************************************************************9 PP DUF260 96 llke 99 + + XP_010106242.1 122 FVLH 125 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.793	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	27	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MSLSTIATTS STPTTTTTTK GNGSAQACAA CKYQRRKCAP DCVLAPYFPH DNQRQFLNAH 60 KLFGVSNITK IIKNLDPRTK DEAMRTIIFQ SDARASDPVG GCYRIICDLQ QQIEYAKAEL 120 NFVLHHLALC RTQHAGAAAV AATTAAPDIA NGVDHLNLYG NNSMTNEGQF LQPVQEHEQY 180 FVLNDDVSSW VVQDSVAPSV SADIKQDMDV KPFIEDHQRG EAVLRAIGDA MILKEEQEYS 240 MQLDDDSKDA TNLFRLTNCS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-29	18	121	4	105	LOB family transfactor Ramosa2.1
5ly0_B	9e-29	18	121	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010106242.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106242.2	0.0	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-52	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	W9S4B2	0.0	W9S4B2_9ROSA; Uncharacterized protein
STRING	XP_010106242.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-54	LOB domain-containing protein 22

Link Out ? help Back to Top
Entrez Gene	21388587

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]