PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106292.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 342aa    MW: 39104.9 Da    PI: 4.7905
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106292.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_010106292.1  57 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                     56689************************************************9 PP
2HD-ZIP_I/II128.23.5e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++yd lk + + L++++++L +e++e
  XP_010106292.1  56 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYDDLKLNFDVLQRDNDSLLKEIRE 148
                     69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1944114IPR009057Homeodomain-like
PROSITE profilePS5007117.57252112IPR001356Homeobox domain
SMARTSM003896.1E-1855116IPR001356Homeobox domain
CDDcd000863.01E-1657113No hitNo description
PfamPF000464.1E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-2059118IPR009057Homeodomain-like
PRINTSPR000311.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.0E-592108IPR000047Helix-turn-helix motif
PfamPF021834.6E-16112154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKRLSSSDSL GALMSVCPTT EEQSPRNNHV YGRDFRSMLD GLDEEGCVEE AGHVSEKKRR  60
LSVEQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGL  120
LKANYDDLKL NFDVLQRDND SLLKEIRELK SKLQEENCTE SNLSVKEELI APTDSDQKQA  180
VMNSDNTCLN PQSGHHDHHH ESKELNFDHQ ESFNNNNNNI NNNNNNNNNM FEVSNVFPLD  240
FKDGSSDSDS SAILNEEITN TKNGGISPLQ THQLMNMSSS SSPSPSSMNC LGSSFQKTTT  300
YQPQFVKIEE HNFFSGEEAC NFFSDEQAPT LHWYCSGEDQ WN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106292.10.0homeobox-leucine zipper protein ATHB-6
SwissprotQ940J11e-83ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLW9RTZ00.0W9RTZ0_9ROSA; Homeobox-leucine zipper protein ATHB-16
STRINGXP_010106292.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-81homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]