PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106320.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 371aa    MW: 41206.6 Da    PI: 4.8276
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106320.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.42.7e-17991732498
           NF-YC  24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                     arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +t++   ++++v   ++fdfl d v +
  XP_010106320.1  99 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCHRTYDITLKRGAKTMNSLHLKQCVHTFNVFDFLKDAVSK 173
                     8**********************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.4E-1698158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.7E-2299172IPR009072Histone-fold
SuperFamilySSF471135.59E-18105175IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSIRQNGIEY SPSTFASIFT IASIPTHISA SLESESELEN SHYGGFLYTL PSRQLGELNL  60
DSIGDKNVFP YSPTWGIIGP YCNMGVYVLS LHVLCFLQAR IKKIMQADED VGKIAMAVPL  120
LVSKALELFL QDLCHRTYDI TLKRGAKTMN SLHLKQCVHT FNVFDFLKDA VSKVPDLGGS  180
DAAGEDRSVT KRRKFVDSED NDSDEESKRN KMHEAGHVSG SGSGRGRGRG RGRGRGRGSR  240
MVERETATHH DKFEDDADIS KHNEFNDQTP ETPDHREEPE GPKENIAGQR NAEAPIRNFD  300
LNVRLDDTGD STSLSAAAPT SSSAQLTPEM KHEEYPGWSL ADVDNMSIDP LQLANLNRRL  360
DEDDEDYDEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-17961581274Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226236RGRGRGRGRGR
2228237RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027967.10.0dr1-associated corepressor
TrEMBLW9S4H10.0W9S4H1_9ROSA; Dr1-associated corepressor
STRINGXP_010106320.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-52NF-YC family protein