PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106406.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 465aa    MW: 52515.5 Da    PI: 6.3292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4387e-134454621374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++l+++cA +vs+g+le a+  L+++s l spdgdpmqR++ayft ALa r++rs+++ly al++++    +++ee+ +++lf+e++P+lk++h
  XP_010106406.1  45 LIRLIVACAYHVSAGNLEDANIWLEHISCLTSPDGDPMQRMVAYFTAALADRILRSWPGLYGALKSTKIL--SVTEEILVQRLFYELCPFLKLAH 137
                     57899*********************************************************99888876..5********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+++HiiD++ sq++Q + Llq+L++Rpegpp+lRiTg+++    +k+ le++  rL++ Ae+l++pf+fn+ ++++le+l+
  XP_010106406.1 138 VITNQAIFEAMEGEKMIHIIDLNSSQPAQMIDLLQTLSARPEGPPHLRITGIHE----HKDVLEQMSLRLTEEAEKLDIPFQFNP-IVSKLENLD 227
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvksls 235
                     +e+Lrvk+gEala+++vlqlh+ll                                                    s+s +s+  + L+++ +ls
  XP_010106406.1 228 IESLRVKSGEALAISSVLQLHYLLatdeemqrknspsvsarlqklslmnqrplkdwlekdlfsllsmspdsdlsPLSLSASSKMGSSLSALSGLS 322
                     **********************************************************************9988556666667888********* PP

            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                     Pkv+vv+eqe++hns+++ler++eal yy+alfd+le+++pr+  er++vE++l+g+ei+n+vac  +er++rhe+lekW+ rle aGF++vpls
  XP_010106406.1 323 PKVMVVTEQESNHNSSNLLERISEALFYYAALFDCLESTVPRTLVERQMVEKMLFGEEIKNIVACDRFERTKRHEKLEKWSLRLELAGFSKVPLS 417
                     *********************************************************************************************** PP

            GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ ++qa +llr+ + +  y++++++g+ +++W+drpL+svSaWr
  XP_010106406.1 418 NQGMMQATRLLRQNHvFSDYNIKDKNGCSMICWHDRPLFSVSAWR 462
                     ***************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.8719441IPR005202Transcription factor GRAS
PfamPF035142.4E-13145462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNRDEGSSSA ASSPLHYFPV SPPSPGVGSP YPWLTEPAEE RGLLLIRLIV ACAYHVSAGN  60
LEDANIWLEH ISCLTSPDGD PMQRMVAYFT AALADRILRS WPGLYGALKS TKILSVTEEI  120
LVQRLFYELC PFLKLAHVIT NQAIFEAMEG EKMIHIIDLN SSQPAQMIDL LQTLSARPEG  180
PPHLRITGIH EHKDVLEQMS LRLTEEAEKL DIPFQFNPIV SKLENLDIES LRVKSGEALA  240
ISSVLQLHYL LATDEEMQRK NSPSVSARLQ KLSLMNQRPL KDWLEKDLFS LLSMSPDSDL  300
SPLSLSASSK MGSSLSALSG LSPKVMVVTE QESNHNSSNL LERISEALFY YAALFDCLES  360
TVPRTLVERQ MVEKMLFGEE IKNIVACDRF ERTKRHEKLE KWSLRLELAG FSKVPLSNQG  420
MMQATRLLRQ NHVFSDYNIK DKNGCSMICW HDRPLFSVSA WRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-633946413381Protein SCARECROW
5b3h_A3e-633946412380Protein SCARECROW
5b3h_D3e-633946412380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106406.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLW9S4P10.0W9S4P1_9ROSA; Uncharacterized protein
STRINGXP_010106406.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-172scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]