PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106503.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 720aa    MW: 79566.6 Da    PI: 8.4828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106503.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07621670147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010106503.1 621 RRPFSVNEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 670
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.17E-7427515IPR029071Ubiquitin-related domain
PROSITE profilePS500539.308430500IPR000626Ubiquitin domain
PROSITE profilePS5129414.922616675IPR017930Myb domain
SMARTSM007171.9E-6620673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10621671IPR009057Homeodomain-like
SuperFamilySSF466891.03E-15622703IPR009057Homeodomain-like
CDDcd116602.49E-16622672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MSHVTDSFLF KTCHHHIVVE QFWENPEGKS LSHTNMNRLD YGFNGYQVPA MPRATRSARR  60
RGTVQKRVAE NKMCAFDLLA TVAGKLLQEE SSPTSSNTSS AKDQCLIVKQ DAKDESKALN  120
VEPCDQGSCD GKLFVSEPVL QAHDENNCSK ESSFPQNDDH SVLTSILPTS NCSERLVTKN  180
IGDGNIKNEI GSFCSQVQDG SSMYRESGIC KLDGEAKTLV KDESNNNREV LIGTGADTGS  240
SEDPVVSRGK PPALLSSDSS AKAPLCVDHV PANSLPSTRD DVKVVSRDDD ENSSGCTHPS  300
IRSKRFRQAP RIGDRRIRKI LASKHWKVGP KFKDETLPNP GEMIKPIYRN RKDCYKRQRS  360
QMTVPFKKRK LFDRSSVWTS DGGINDERFF NSPEKGIGDA SESCVKLQGG NGTCSRAGQN  420
TSFQCRDSHV KLRIKSFRVP ELFIEIPETA TVGSLKRTVM EAVTAILGGG LRIGVLLQGK  480
KVRDDNITLQ QTGISHDNEL DSLGFTLEPN PSQSSTPLCT GDSPHFLSGD APQPLIRYSP  540
NPSIVDQGTS NVSQEPHAAN LGNLVESDHD SAPSPTDMSV DKSTADLKAL VHVPEMSVDA  600
LAVVPPPRKS KRAEIAQRRI RRPFSVNEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY  660
VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQL KPLPETCLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-576057131109Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028075.10.0telomere repeat-binding protein 5 isoform X1
TrEMBLW9RU610.0W9RU61_9ROSA; Telomere repeat-binding protein 5
STRINGXP_010106503.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-140TRF-like 2