PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010106507.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 630aa MW: 71936.9 Da PI: 6.7336

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010106507.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.2	1.8e-111	259	628	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++c + v++ d ++a+++L+++++l+sp gd++qR+a+yf+++L+arl+++ y+a +e s ss+ l+a++l+ ++P++++s+ XP_010106507.1 259 TLLIQCSQSVANYDRRNANTFLKQIRQLSSPCGDSIQRVAHYFANGLEARLTGTKMPSYSAHVNNELS---SSDILKAYQLYITACPFFRLSFCF 350 69*************************************************666666666666666...8******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN++I + +++++r+HiiDf+i +G+QWp L+q L++Rp+gpp+lR+Tg++ p++g +e++eet++rLa+++++++vp e+nv +a+++e+++ XP_010106507.1 351 ANSTIRKLAQQATRIHIIDFGILYGFQWPGLIQRLSQRPGGPPKLRVTGIELPQPGfrPAEKIEETKRRLASYCDRFNVPSEYNV-IAQKWETIR 444 ***************************************************9************************9.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++pgE ++Vn+ +++ +++de+v ++++rd+vLkl+++++P+++++ + +n++ F +rf eal ++s lfd+++++++re+e r+k XP_010106507.1 445 YEDLKIEPGEIVVVNCLHRMRHVPDETVVTSNPRDSVLKLIRRINPELFIHGVVNGAYNAPCFGARFKEALLHFSGLFDMFDTTVSREDEYRRKF 539 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++ gr+ivnvvaceg er+ r e +++W++r +aGFk++pl+ ++ + +k +r + + + +e++ ++l++gWk+r+++++S+W+ XP_010106507.1 540 EKAIYGRDIVNVVACEGLERVDRPEPYKQWQARNIKAGFKQIPLDREIFEAVKETVRSSYHKDFVIEQDGQWLLQGWKGRRIYALSCWK 628 ********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.576	231	608	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-109	259	628	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MDTLFEGFEY SLSMNGFNLS QDSTSLNSNQ NPSNNPRTKN GNIQQPPPKI PTNLHQSNDS 60 FNCTLKFISE MLMEEEDLER KALMLKDSLA LQVAEKSFYD ALGQSCPSSF MNQTNTGKSE 120 YESESFQTSV SGSSLDTFLV HDSSFEVQSV ANKFRGKPQI VDLSKLGQNS QQSGKKYRQR 180 EYDYDDDQDL GRRSYKQSAV YAGDDSEPAE IFDLVLLSDD DSDEPNSLHK SAQKLQLNEQ 240 EKGYAKTSQS MEEMAGLWTL LIQCSQSVAN YDRRNANTFL KQIRQLSSPC GDSIQRVAHY 300 FANGLEARLT GTKMPSYSAH VNNELSSSDI LKAYQLYITA CPFFRLSFCF ANSTIRKLAQ 360 QATRIHIIDF GILYGFQWPG LIQRLSQRPG GPPKLRVTGI ELPQPGFRPA EKIEETKRRL 420 ASYCDRFNVP SEYNVIAQKW ETIRYEDLKI EPGEIVVVNC LHRMRHVPDE TVVTSNPRDS 480 VLKLIRRINP ELFIHGVVNG AYNAPCFGAR FKEALLHFSG LFDMFDTTVS REDEYRRKFE 540 KAIYGRDIVN VVACEGLERV DRPEPYKQWQ ARNIKAGFKQ IPLDREIFEA VKETVRSSYH 600 KDFVIEQDGQ WLLQGWKGRR IYALSCWKAA

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MDTLFEGFEY SLSMNGFNLS QDSTSLNSNQ NPSNNPRTKN GNIQQPPPKI PTNLHQSNDS  60
FNCTLKFISE MLMEEEDLER KALMLKDSLA LQVAEKSFYD ALGQSCPSSF MNQTNTGKSE  120
YESESFQTSV SGSSLDTFLV HDSSFEVQSV ANKFRGKPQI VDLSKLGQNS QQSGKKYRQR  180
EYDYDDDQDL GRRSYKQSAV YAGDDSEPAE IFDLVLLSDD DSDEPNSLHK SAQKLQLNEQ  240
EKGYAKTSQS MEEMAGLWTL LIQCSQSVAN YDRRNANTFL KQIRQLSSPC GDSIQRVAHY  300
FANGLEARLT GTKMPSYSAH VNNELSSSDI LKAYQLYITA CPFFRLSFCF ANSTIRKLAQ  360
QATRIHIIDF GILYGFQWPG LIQRLSQRPG GPPKLRVTGI ELPQPGFRPA EKIEETKRRL  420
ASYCDRFNVP SEYNVIAQKW ETIRYEDLKI EPGEIVVVNC LHRMRHVPDE TVVTSNPRDS  480
VLKLIRRINP ELFIHGVVNG AYNAPCFGAR FKEALLHFSG LFDMFDTTVS REDEYRRKFE  540
KAIYGRDIVN VVACEGLERV DRPEPYKQWQ ARNIKAGFKQ IPLDREIFEA VKETVRSSYH  600
KDFVIEQDGQ WLLQGWKGRR IYALSCWKAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-46	263	627	25	378	Protein SCARECROW
5b3h_A	7e-46	263	627	24	377	Protein SCARECROW
5b3h_D	7e-46	263	627	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010106507.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106507.1	0.0	scarecrow-like protein 30
TrEMBL	W9S4X0	0.0	W9S4X0_9ROSA; Uncharacterized protein
STRING	XP_010106507.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-165	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	21407971