PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106509.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 606aa    MW: 69446.1 Da    PI: 6.318
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106509.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.91.1e-1112346042374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+av+s d++++ +lL+++++++sp+g+ +qRla+yf+ +L+ar +  ++ ly+ l ++ +s    ++ l++++++ +++P+  +s++
  XP_010106509.1 234 STLLTQCAQAVASYDQKRTIQLLSQIRQHSSPYGNDTQRLAHYFADGLEARFSA-GTPLYSPLGSNGAS---AADILKSYQVYIKACPFKLMSNF 324
                     579*************************************************98.999**999888887...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++I + +e+++++HiiDf+i +G QWp+L+q La Rp+gpp+lRiTg++ p+sg   +e++e+tg+rLa+++e+++vpfe++v +ak++e++
  XP_010106509.1 325 YANRTIAKLAEQATALHIIDFGILYGYQWPCLIQRLAHRPGGPPKLRITGIEFPQSGfrPSERVEQTGQRLANYCERFNVPFEYSV-IAKKWEMV 418
                     ********************************************************9****************************9.7******* PP

            GRAS 190 eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +leeL++++ +E+++Vn+ +++++l+de+v  + +rd+vL+l++++sP+++++   +  hn++ F++r+ eal ++salfd++ea+l +++ +r 
  XP_010106509.1 419 KLEELKINRdEEVTVVNCLYRMKNLPDETVIEDCPRDAVLNLIRRISPDLFIHGVVNGTHNAPFFVTRVREALFHFSALFDMFEASLKKDDPHRL 513
                     *********88999**************999999************************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + Ere++gr+++nvvaceg +r+er et+++W+ r  +aGF++v+l+++    +k ++rk + + + v+e+  ++++gWk+r   ++S+Wr
  XP_010106509.1 514 MFEREVFGRDVMNVVACEGLQRVERPETYRQWQVRNVRAGFEKVALDQELLRRVKNMVRKGYHKDFVVDEDGTWILQGWKGRIFHAISCWR 604
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.365207584IPR005202Transcription factor GRAS
PfamPF035144.0E-109234604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDTLLEETLG SMNKFRFEPS IHLNQNLVHD FNDGFADAEV PNEAYSSSPG SGSEGDSSEN  60
VHISNTIILK YISEILMEED LETRPCMLQD CLALQTAEKS FYDVIGQKYP DTSSSCSSNH  120
DLQTSLVDYP SIFDKSKGKK SSHNRGFGDD SEEEQRRNKH SAIYSDYSES SDIFDEVLLC  180
RNPTREEEDS ELCSPPNDDD DDDSKADKKG KSRRRGKTRQ RKKRNDRNQV VDLSTLLTQC  240
AQAVASYDQK RTIQLLSQIR QHSSPYGNDT QRLAHYFADG LEARFSAGTP LYSPLGSNGA  300
SAADILKSYQ VYIKACPFKL MSNFYANRTI AKLAEQATAL HIIDFGILYG YQWPCLIQRL  360
AHRPGGPPKL RITGIEFPQS GFRPSERVEQ TGQRLANYCE RFNVPFEYSV IAKKWEMVKL  420
EELKINRDEE VTVVNCLYRM KNLPDETVIE DCPRDAVLNL IRRISPDLFI HGVVNGTHNA  480
PFFVTRVREA LFHFSALFDM FEASLKKDDP HRLMFEREVF GRDVMNVVAC EGLQRVERPE  540
TYRQWQVRNV RAGFEKVALD QELLRRVKNM VRKGYHKDFV VDEDGTWILQ GWKGRIFHAI  600
SCWRPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4523960525380Protein SCARECROW
5b3h_A1e-4523960524379Protein SCARECROW
5b3h_D1e-4523960524379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210222KSRRRGKTRQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106508.20.0uncharacterized protein LOC21407972
TrEMBLW9RUG50.0W9RUG5_9ROSA; Uncharacterized protein
STRINGXP_010106509.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein