PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106804.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 456aa    MW: 49664.3 Da    PI: 8.0805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106804.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08108130326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+++ G C yGd+Ck+ H+
  XP_010106804.1 108 EKLCHFWSQ-GNCGYGDKCKYLHC 130
                     579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2583056IPR000571Zinc finger, CCCH-type
SMARTSM003560.973155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812105132IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4107131IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-6108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5109126IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.93E-41112447IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.2E-43127448IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.5E-6136175IPR001680WD40 repeat
PfamPF004003.4E-5139175IPR001680WD40 repeat
PROSITE profilePS5029416.348143333IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.285143184IPR001680WD40 repeat
PRINTSPR003203.7E-5162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM003205.2215252IPR001680WD40 repeat
SMARTSM003200.0016259296IPR001680WD40 repeat
PfamPF004000.0025261296IPR001680WD40 repeat
PROSITE profilePS5008211.912266305IPR001680WD40 repeat
PRINTSPR003203.7E-5283297IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7299344IPR001680WD40 repeat
SMARTSM003201.5365407IPR001680WD40 repeat
PRINTSPR003203.7E-5394408IPR020472G-protein beta WD-40 repeat
SMARTSM0032045411447IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDVDGGGSKR VFHRLSGGAG GGGPSPSTDP RNQKVCFHWR AGKCNRFPCP YLHRELQPPP  60
PQNGTASSKR QYHGFSGDDP EPRRPNNSTW GRVHGGAGGN NKFIRKTEKL CHFWSQGNCG  120
YGDKCKYLHC WTFGDGLSLL TQLEGHQKVV SGIAFPFGSD KLYTGSKDET VRVWDCQSGQ  180
CTAVINLGGE VGCMINEGPW IFVGLLNMVK AWNIQTNMEL SLSGPVGQVY SMVVGKDLLF  240
AGTQDGSILA WKFNAAANCF EPVTSLTGHS LAVVSLVVGA NRLYSGSMDH SIKVWSLETL  300
QCLQTLTDHS SVVMSLLCWN QFLLSCSLDK TIKAGVTFAV YVWVATQNGS LEVTYTHNEE  360
HVRNKVCCLD KQDRTSKGVL ALDGMPDSEG KPVLLCACND NSVRLYDLPS FAERGKVFSK  420
QEVRAIQRGP GSLFFTGDGT GQLRIWSMLA DSASSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201223345323Tako8
6g6n_A1e-201223345323Tako8
6g6n_B1e-201223345323Tako8
6g6n_C1e-201223345323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028274.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLW9RV350.0W9RV35_9ROSA; Zinc finger CCCH domain-containing protein 48
STRINGXP_010106804.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein