PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106901.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRF
Protein Properties Length: 623aa    MW: 67035.3 Da    PI: 7.0358
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106901.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.6e-24234278145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_010106901.1 234 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 278
                     79****************************************985 PP
2QLQ561.2e-19164200137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k
  XP_010106901.1 164 GPFTPSQWIELEHQALIYKYITSNVPVPSNLLIPLKK 200
                     59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.1E-11164200IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.083165200IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-14165198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287234278IPR014977WRC domain
PfamPF088798.1E-21235277IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MDFSLVSLES LVGPTNPEGG SASSSEAKQQ QQQHQQKGVG SGFVKQERPG LEEDEWRSSK  60
VAKTVDLSSS AYRAMPFSQG TNVNNPLMRS NPLLLSADHV RHQQEHMLSF SSQKPENPFL  120
GKDGAGLAFP YYQRMTPIYS RNAAGYGSGS LNTSMHVPYT GIRGPFTPSQ WIELEHQALI  180
YKYITSNVPV PSNLLIPLKK SLNPYSLSGS SSAPLPPNSL GWGSFHLGYA DNTDPEPGRC  240
RRTDGKKWRC SRDAVADQKY CERHINRGRH RSRKPVEGQT GHAASGAAAT SKAVPPMTSS  300
VSTTAAMSSA MPISGASNSL ATITQHQFKG LQSGAAASST DAALVNRMQD LRGLSVMSSS  360
NVNLKSNDST FNILKQEIVP GGSSHLEFGL VSTDSLLNPS QESSYMDSKN YDTSSFLDFS  420
GQETQDQHPL RHFIDDWPKD NSDQSVIAWP EEMKSDWTNL SMSIPVTTSD FSSSSNSPKQ  480
EKLALSPLRL SREIEPMQMN LGVSNDLGEA AARKQTSWVP VSWAGGSNCS MGGPLGEVLT  540
NTTGNVKAYK SPSSLNLLTE GWDGSPQVGS SPTGVLQKST FCSLSNSSSE SSPRADNKKN  600
IDGVSVYDDV LGSTLATSSV PSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106901.10.0growth-regulating factor 1 isoform X1
TrEMBLW9S6210.0W9S621_9ROSA; Uncharacterized protein
STRINGXP_010106901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-107growth-regulating factor 1