PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107436.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 307aa    MW: 34661.6 Da    PI: 6.9589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107436.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.44e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ ++ + G g+W++++   g+ R +k+c++rw +yl
   XP_010107436.1 15 KGLWSPEEDLRLKSYILKNGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.43e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
   XP_010107436.1  68 RGTFSKQEEETILTLHQMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0091062IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-201065IPR009057Homeodomain-like
SuperFamilySSF466895.14E-2812109IPR009057Homeodomain-like
SMARTSM007171.9E-91464IPR001005SANT/Myb domain
PfamPF002491.1E-121562IPR001005SANT/Myb domain
CDDcd001673.62E-81862No hitNo description
PROSITE profilePS5129426.41763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2666117IPR009057Homeodomain-like
SMARTSM007171.7E-1667115IPR001005SANT/Myb domain
PfamPF002493.0E-1668113IPR001005SANT/Myb domain
CDDcd001671.86E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGCKSSDKPK PKHRKGLWSP EEDLRLKSYI LKNGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSKQEEETIL TLHQMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKT  120
EEITKTKTQC TSSSSDNNNN NNNELEYSSP SSENQADRIP SHQSLEKTGI KSPTNSFPHH  180
DHLNYDFSKD VQASRSSLPK LFFAEWLLMD HHQAHGSSSA NTVEPNLVPR EGFGHGLSLQ  240
DAVMGHGFLM NEGIFGGHFQ DEIVGHDEML NSELKFEDQI SGSGFVDFIS GGDVCIDFNV  300
DNDVMYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107436.10.0transcription factor LAF1
TrEMBLW9RWY90.0W9RWY9_9ROSA; Transcription factor LAF1
STRINGXP_010107436.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-61myb domain protein 19