PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107532.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 691aa    MW: 75737.5 Da    PI: 6.7825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107532.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23111212199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +
  XP_010107532.1 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 201
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_010107532.1 202 NGDLCVGIRRA 212
                     8999****997 PP
2Auxin_resp114.97.4e-38280363183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +d++rWp+S+Wr+L+
  XP_010107532.1 280 AATLASSGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVADSLRWPDSPWRLLQ 363
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-37102215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-29105214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-21110211No hitNo description
PfamPF023628.6E-22111212IPR003340B3 DNA binding domain
SMARTSM010191.7E-21111213IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112111213IPR003340B3 DNA binding domain
PfamPF065075.9E-33280363IPR010525Auxin response factor
PROSITE profilePS5174520.935605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MKEVEKCLDP QLWHACAGGM VQMPPVNSKV FYFPQGHSEH ACGPVDFRNC PRVSPCNLCR  60
VSSIKFMADP ETDEVYAKLR LVPLSCNELG YDDDGIGGLN GSETQEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT PRRHLLTTGW  180
STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG GNCAMPYGGF  240
STFLREDENK LLRNGNGNGS SLNGGLMGKG KVRPESVIEA ATLASSGQPF EVVYYPRAST  300
PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAD SLRWPDSPWR  360
LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS DFPFDGHIPI  420
PTFSGNLLGH SNPFGCLSEN TPAGMQGARH AHYGLSISDL HLNKLQSGLF PVGFPPFDHV  480
AAATKFSSNT MNYKPNLNEK VSCLLTMAHA TQAPKKPDDV KPTPLILFGQ PILTEHQISL  540
SCSGDTVSPV LTGNSSSDGN GDKTANFSDG SGSALHQQGP LERSLGEGFQ WYKDNRQETE  600
PNLETGHCKV FMESEDVGRT LDLSLLGSYD ELYRKLADMF GIENSETLSH ALYRDGTGAV  660
KHIGDEPFSD FTRTARRLTI LMDSGSDNIG M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-78838451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107532.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLW9S7Q70.0W9S7Q7_9ROSA; Auxin response factor
STRINGXP_010107532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]