PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107555.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 332aa MW: 38128.6 Da PI: 8.1401

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107555.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.2e-52	19	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deel+v+yL++kv +++l++ ++i+++d+yk++Pw+Lp k++ +++ew+fF++rd+ky++g+r+nra+ sgyWkatg+dk+++s+ XP_010107555.1 19 LPPGFRFHPSDEELIVHYLRNKVVSRPLPAPSIITDIDLYKYNPWELPGKASFGDEEWFFFTPRDRKYPNGSRPNRAAGSGYWKATGTDKHIFST 113 79**************************999***********988899************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykgr pkg+kt+W+m+eyrl XP_010107555.1 114 scGTKSIGVKKALVFYKGRPPKGVKTEWIMNEYRL 148 888999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-62	11	182	IPR003441	NAC domain
PROSITE profile	PS51005	58.919	19	182	IPR003441	NAC domain
Pfam	PF02365	2.9E-26	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEIMINMEQN NSTHDQLQLP PGFRFHPSDE ELIVHYLRNK VVSRPLPAPS IITDIDLYKY 60 NPWELPGKAS FGDEEWFFFT PRDRKYPNGS RPNRAAGSGY WKATGTDKHI FSTSCGTKSI 120 GVKKALVFYK GRPPKGVKTE WIMNEYRLLD SMIWSTTSTT TNPKRKGSMR LDDWVLCRVR 180 QKSNNNTRST WDSDRNCSSY NHDHDHQNHN HNPNQTCSKS TTSTPSQNLE MNMIIDYLYK 240 DFPMLPYIFA TSQQPLIPCV EKTTASSTVS FQSSENINPK PSSTGTSVSR YDDHGLKCRW 300 DMDIHQDQSI KGANDHDWSS KIQEISGPVY DL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-66	5	185	1	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107555.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107555.2	0.0	NAC domain-containing protein 18
Swissprot	A0SPJ6	6e-80	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	W9SLK6	0.0	W9SLK6_9ROSA; NAC domain-containing protein 29
STRING	XP_010107555.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-78	NAC domain containing protein 25

Link Out ? help Back to Top
Entrez Gene	21407150

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]