PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107568.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

S1Fa-like

Protein Properties

Length: 84aa MW: 9107.85 Da PI: 10.5762

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107568.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	118	3.5e-37	18	84	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++ akG+n Glivllvv g+llvflvgny+ly+ aqk lPP+kkkPvskkk+k+e+lkqG+++PGe XP_010107568.1 18 VNAGAKGFNAGLIVLLVVVGILLVFLVGNYVLYMVAQKRLPPKKKKPVSKKKIKKERLKQGISAPGE 84 56779*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	3.1E-35	21	84	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MDDFSADHSP VDPSFDSVNA GAKGFNAGLI VLLVVVGILL VFLVGNYVLY MVAQKRLPPK 60 KKKPVSKKKI KKERLKQGIS APGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	68	KRLPPKKKKPVSKKK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107568.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107568.1	2e-53	DNA-binding protein S1FA
Swissprot	P42553	2e-11	S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBL	W9RX42	5e-52	W9RX42_9ROSA; DNA-binding protein S1FA1
STRING	XP_010107568.1	9e-53	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Link Out ? help Back to Top
Entrez Gene	21407163