PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107640.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 335aa    MW: 37812.6 Da    PI: 9.7713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107640.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11157203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+L+
  XP_010107640.1 157 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYMKQLE 203
                     6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.828153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-11158207No hitNo description
SuperFamilySSF474591.57E-16158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQGMEDSSYI NQWQMNSLDE LSMLPLATTL GENLHHHYHH HPSFNIKASL ENSHIGMKHH  60
KVNGWNSSES INNLSNPQVL ASSPNLFSFV SSNYNTNQMG LVKPKEEAIR LKNINTVTVP  120
SDVLVSQGCF PNQNYVLKAN QGAKRISTST KLSQAKDHIL AERKRREKLS QRFIALSAIV  180
PGLKKMDKAS VLGDAIKYMK QLEEKVKTLE EQMRKKNMES VVFVKKSRIF AVEDNSSSDE  240
NVSGGSFSKP LPEIEARVCD KNVLIRIHCE KRKGILEKTI AEVEKFHLTV INTSCMTFGS  300
FSLDVTIIAQ MNVEFSLTVK DLVKNLRLAF TLFMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15157217869Transcription factor MYC2
5gnj_B4e-15157217869Transcription factor MYC2
5gnj_E4e-15157217869Transcription factor MYC2
5gnj_F4e-15157217869Transcription factor MYC2
5gnj_G4e-15157217869Transcription factor MYC2
5gnj_I4e-15157217869Transcription factor MYC2
5gnj_M4e-15157217869Transcription factor MYC2
5gnj_N4e-15157217869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107640.20.0transcription factor bHLH18
SwissprotQ9T0722e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLW9SFB80.0W9SFB8_9ROSA; Uncharacterized protein
STRINGXP_010107640.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-63bHLH family protein