PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107648.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 595aa    MW: 66888.6 Da    PI: 4.9042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107648.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13355398755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++Er+RR+++N+++ +Lr+l+P+ +      Kl+Ka+iL  A+eY+++Lq
  XP_010107648.1 355 IAERKRRKKLNERLYTLRSLVPNiS------KLDKASILGDAMEYVRDLQ 398
                     78*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-1337165IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.253348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18348411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-17354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-13355400No hitNo description
Gene3DG3DSA:4.10.280.107.0E-17355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGMKFFEPEK ERFVGEGKIC CDFLSSPSSQ EPEESPEPPH RRFIEWMNCC CSGSENAQNG  60
GDEELLFPVS SPVLPCRDAM FQHPKANSCD LLFQLPTSMP LDSGIYAQTL ISNQPNWLNS  120
SSATCSHVLE ESVGTRVLIP LPGGLIELFV TKQISEDQNV IDFITTQCNI SLEQEALINI  180
SNMEASFGVN MNSMSEIPSK SYLGNEVDKM DPNNHLQPHI SPTAAFENLS YDISADRMRV  240
CSSPMNLQQF SYGSENRPRN DAFFDCQHDP LLSDKQMDSS TDAMQASMMS DTTNMHMHFM  300
ETAENKDQHG NEKDLSKPEG GQSNSLSECS DQLDDEDDGK HRRKSGKGAQ CKNLIAERKR  360
RKKLNERLYT LRSLVPNISK LDKASILGDA MEYVRDLQRQ AKELQDELEE HSDNDGLKDK  420
VINGKRKNVP SDILSRDDVN FGPKSEHDKA PNGFHLETLS NGNVSKPNQD LDTTNDKAPQ  480
MEPQVEVAQI DGNEFFVKVF CEHKPGRFVR LMEALNSLAL EVTNANVTTF RNLVSNVLKV  540
EKDSKTVIQA DHLRDYLLEL TRNPSRGLSE MSKASENGSS IDYQHHPHHH HQPTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341362RRKSGKGAQCKNLIAERKRRKK
2356363ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028790.10.0LOW QUALITY PROTEIN: transcription factor ABORTED MICROSPORES
TrEMBLW9S8300.0W9S830_9ROSA; Uncharacterized protein
STRINGXP_010107648.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-126bHLH family protein