PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107684.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 222aa MW: 23835.8 Da PI: 9.9583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107684.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.2	3.9e-15	23	70	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ve++k+L XP_010107684.1 23 CKSHKEAERRRRQRINAHLSTLRSLLPNT-----TKTDKASLLAEVVEHVKEL 70 789***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.348	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-12	23	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.22E-13	24	73	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-15	25	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	25	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-13	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.22E-7	118	186	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.4E-8	120	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDGGDSVVSS ASKADSARST GACKSHKEAE RRRRQRINAH LSTLRSLLPN TTKTDKASLL 60 AEVVEHVKEL RKKAADVERQ HGGLWCGAAT GSEPEASPFP GESDEASLSY CDGERKLVKA 120 TVCCEDRPGL NRDLARAVRS VRAKAVRAEM TTVGGRTKNV MVVQFGGGGG EEDVRALKRA 180 LKAVVENRAS SSGLGQVVSR NKRARVYGSI NEGDYELLLT NI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107684.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107684.1	1e-160	transcription factor bHLH30
TrEMBL	W9RXF4	1e-159	W9RXF4_9ROSA; Uncharacterized protein
STRING	XP_010107684.1	1e-160	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11441	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	5e-32	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21391096