PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107868.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 294aa    MW: 33275.6 Da    PI: 8.2608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107868.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.27.8e-122261645
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + n +vtfskRr+g++ KA  L+   +a+vav+++s+tg+
  XP_010107868.1 22 SNNLYVTFSKRRKGLFNKAGTLCAKYGAQVAVLVLSPTGN 61
                    56789*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.998969IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-6968IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-132178IPR002100Transcription factor, MADS-box
PfamPF003193.6E-132265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPKRSRDNLM ELKRTTPKQE VSNNLYVTFS KRRKGLFNKA GTLCAKYGAQ VAVLVLSPTG  60
NPSAFGHTTV EEVLQCYSLR QMIPNYPFVI GNNGGLTDKP RDQVRQIEGL KARIKQAQNS  120
EGCSLKNLMA WVEREWEACK TVEELEFLKQ KYLALLENVR NRFMRSPSTI NYNYATSADH  180
HGLFNVDVRP LSVMGPPNDM SYLSEKKFAY HHYSGEEGNI KSTDTTSGTY VQESMENCFW  240
DFTHYQNYLI GSNHVGMASH DCVSFPYVGG LYGTNGRDFS NMDQVFCNGG TSIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9RY520.0W9RY52_9ROSA; Agamous-like MADS-box protein AGL61
STRINGXP_010107868.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1884856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-14AGAMOUS-like 61