PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107957.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 207aa    MW: 23654.8 Da    PI: 9.3846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107957.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14129201179
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k +++s+v+   +l lp +f+++h   ++e+ t+tl de+g+++  k+  +k+s    l++GW++F+ +++L +g+ 
  XP_010107957.1 129 FIKPMLQSHVTGGFWLGLPSDFCKRHL--PHEDATITLVDEDGEEFPTKYLADKSS----LSGGWRGFAIDHQLVDGEA 201
                     89************************5..346779***************888888....****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-15120202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-18122202IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-22127202No hitNo description
PROSITE profilePS5086310.503129207IPR003340B3 DNA binding domain
SMARTSM010198.6E-8129205IPR003340B3 DNA binding domain
PfamPF023624.2E-12129202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVESKLTNEE CRRQRLEENK KRMEELNLTK LAQALKPSSP KSTPVKKLRP RNGLPVEPSS  60
LPLRRSSRVS NKPPPNYKDV PIEPLGRPRR SYQRRDLLNR IYASDETRQY ANDRAEKIQS  120
ELDSDVPNFI KPMLQSHVTG GFWLGLPSDF CKRHLPHEDA TITLVDEDGE EFPTKYLADK  180
SSLSGGWRGF AIDHQLVDGE ALPLIIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028935.11e-147B3 domain-containing protein At3g19184
SwissprotQ1G3M39e-71Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLW9RY771e-150W9RY77_9ROSA; B3 domain-containing protein
STRINGXP_010107957.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]