PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108163.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 170aa    MW: 18818.6 Da    PI: 8.301
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108163.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.3e-4186162278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cq+++C++dl++ k+yhrrhk+Ce+h+ka+vvlv+gl+qrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+++
  XP_010108163.1  86 CQADNCSVDLTDSKQYHRRHKICEFHAKATVVLVNGLQQRFCQQCSRFHGLAEFDDTKRSCRRRLAGHNERRRKSSS 162
                     **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3478147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.14683160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-3884164IPR004333Transcription factor, SBP-box
PfamPF031102.6E-3286159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEPSRGKRSL KCKSMEELEG EEEEEEEEED DVSRLGFAGD DVTRKKRPAM ATSSSSSTVF  60
TASSTSGTAA RRGGGSGAGG STRPSCQADN CSVDLTDSKQ YHRRHKICEF HAKATVVLVN  120
GLQQRFCQQC SRFHGLAEFD DTKRSCRRRL AGHNERRRKS SSDLHREGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3574159184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108163.11e-121squamosa promoter-binding protein 1
SwissprotQ387416e-45SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLW9SN751e-119W9SN75_9ROSA; Squamosa promoter-binding protein 1
STRINGXP_010108163.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-39squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]