PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108198.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LSD

Protein Properties

Length: 184aa MW: 19833.5 Da PI: 4.6305

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108198.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1.1e-12	92	116	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+G+ V+C++C+tV XP_010108198.1 92 CGSCRRLLKYPPGSQQVQCSCCQTV 116 ************************9 PP
2	zf-LSD1	43	7.4e-14	130	154	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ V+C++C++V XP_010108198.1 130 CGSCNVLLMYPYGASQVKCSCCQFV 154 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.0E-16	89	119	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-9	92	116	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-12	127	155	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.9E-11	130	154	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MELESKAKEE VEVEVKVEEV EEDEGPPPGY QTILPPLQPP SPPPPQPSSS PPKEAPEPML 60 TPSTDSTPTL TPTHTPTPTP KSTLSEIAQI VCGSCRRLLK YPPGSQQVQC SCCQTVNFVL 120 EAHQVGQVKC GSCNVLLMYP YGASQVKCSC CQFVTEIGAH NQRPPWSAQQ GQPLPALNPF 180 QSTA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108198.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108198.1	1e-128	protein LOL2
TrEMBL	W9SNB3	1e-127	W9SNB3_9ROSA; Uncharacterized protein
STRING	XP_010108198.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-32	lsd one like 2

Link Out ? help Back to Top
Entrez Gene	21397659