PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108449.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YB
Protein Properties Length: 566aa    MW: 63129 Da    PI: 7.8024
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108449.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.94.1e-55410503194
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yre +
  XP_010108449.1 410 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYREGD 503
                     59*****************************************************************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF567521.4E-2528222IPR001544Aminotransferase class IV
PfamPF010635.9E-1631314IPR001544Aminotransferase class IV
Gene3DG3DSA:3.20.10.101.1E-24158222No hitNo description
SuperFamilySSF567521.4E-25256317IPR001544Aminotransferase class IV
Gene3DG3DSA:3.20.10.101.1E-24256321No hitNo description
Gene3DG3DSA:1.10.20.102.7E-52409510IPR009072Histone-fold
SuperFamilySSF471131.55E-38413509IPR009072Histone-fold
PfamPF008081.4E-27416480IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.9E-20444462No hitNo description
PROSITE patternPS006850447463IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.9E-20463481No hitNo description
PRINTSPR006155.9E-20482500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSTSRFLFSN GVFFNSSDTP PVTTFLETLP GAYTTTRSHE NGSRLLFWER HLNRLCDSVR  60
ILSNSHPKLL FGDNRPSDFS RSFWELELRC LVNDSVSKVL PIAMEERTDG EELSITALVT  120
GSLGKVSEIG NLGRERAGNV LDVYVHVGIY APTVFGIREN GANLAVVGRR REAAEAKYSD  180
WVRMRKPLEK LRPPSATELL LSNDGDRLLE GSVSNFFVVC REVHNQDLEF SDYIRLDKGE  240
ARGKCLDEKE IKDCFEVQTA PLRDGVLPGI IRQLVIDVCL TKGIPFREVA PSWSEHEIWE  300
EAFITNSLRI LQHVETISIP DSWDSLHSKS WKEISWNNMQ FERFWTLSYG PERGNGKSSP  360
GRILRFPDAD HGVGGTGESG GPRARRGGES HESGGEQSPH ASGGGAGGGV REQDRYLPIA  420
NISRIMKKAL PANGKIAKDA KDTVQECVSE FISFITSEAS DKCQKEKRKT INGDDLLWAM  480
ATLGFEDYIE PLKIYLARYR EGDTKGSARG GESSAKRDAV ASGGGQNPQE LLRSTYSHHI  540
SVSPPSHRHQ GFKRRNRALR RFACTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-44411501494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-44411501494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029294.10.0uncharacterized protein LOC21397270 isoform X2
TrEMBLW9RZQ90.0W9RZQ9_9ROSA; Nuclear transcription factor Y subunit B-8
STRINGXP_010108449.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF670633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.75e-65nuclear factor Y, subunit B1