PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108531.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 396aa MW: 44714.2 Da PI: 9.2251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108531.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	85	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ +hn Er RR++iN+ ++ Lr llP + + kKls +++ ++v+YI +Lq XP_010108531.1 85 RKLNHNVSERDRRKKINHLYSSLRALLPAsD---HTKKLSIPATVSRVVKYIPELQ 137 6889***********************44...6666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	84	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-15	85	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	85	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-12	85	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.18E-13	85	141	No hit	No description
SMART	SM00353	1.2E-10	90	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MLALSPPSFS TNIAYWPLED TLGHDDQNYF YRDVEPANSD QSVFLNSFPM TLVTSDQRSR 60 AELDWLASPT TTTGAISRDL SMAVRKLNHN VSERDRRKKI NHLYSSLRAL LPASDHTKKL 120 SIPATVSRVV KYIPELQQEV EGLIRKREEL LSITNSRQLQ VGQEIKNQIK SISRTSLSSV 180 SASQLNNKDV AVQISTLKAD KNYTLSEILH NLEEDGLSVL NISSFESSCG RVFHNLHLQM 240 SKLMRKIKRY SESEDVDGVV RTLTNVRHVF QLRRSLISLE ALDTLGCEYY AKSGFMQVNR 300 GDLVAIKGEK VKNLYKLIGT TVVGGAIKEE LCQEESSSVM KEVVGVKWCN KMWIIVEDNK 360 DKMVKTCGSE DALKKKKTIP HVKFDKSLNL AHVYSC

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MLALSPPSFS TNIAYWPLED TLGHDDQNYF YRDVEPANSD QSVFLNSFPM TLVTSDQRSR  60
AELDWLASPT TTTGAISRDL SMAVRKLNHN VSERDRRKKI NHLYSSLRAL LPASDHTKKL  120
SIPATVSRVV KYIPELQQEV EGLIRKREEL LSITNSRQLQ VGQEIKNQIK SISRTSLSSV  180
SASQLNNKDV AVQISTLKAD KNYTLSEILH NLEEDGLSVL NISSFESSCG RVFHNLHLQM  240
SKLMRKIKRY SESEDVDGVV RTLTNVRHVF QLRRSLISLE ALDTLGCEYY AKSGFMQVNR  300
GDLVAIKGEK VKNLYKLIGT TVVGGAIKEE LCQEESSSVM KEVVGVKWCN KMWIIVEDNK  360
DKMVKTCGSE DALKKKKTIP HVKFDKSLNL AHVYSC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108531.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108531.1	0.0	transcription factor ORG2
TrEMBL	W9SP46	0.0	W9SP46_9ROSA; Transcription factor ORG2
STRING	XP_010108531.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-45	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21402322