PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108641.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Trihelix

Protein Properties

Length: 611aa MW: 68941 Da PI: 6.5192

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108641.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.3	2.8e-30	82	166	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e g++rs k+Ckek+en+ k+++++k+g+ +++ + +t+++fdqlea XP_010108641.1 82 RWPRQETLALLKIRSDMDATFRDSSLKAPLWEEVSRKLAELGYKRSGKKCKEKFENVYKYHRRTKDGRTGKS--DGKTYRFFDQLEA 166 8******************************************************************964..5557*****85 PP
2	trihelix	101.8	5.3e-32	428	513	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWe++s+ mr+ g+ rs+k+Ckekwen+nk++kk+k+++kkr s++s+tcpyf+ql+a XP_010108641.1 428 RWPKAEVEALINLRTNLDLKYEENVPKGPLWEDISAGMRRLGYDRSSKRCKEKWENINKYFKKVKDSDKKR-SDDSKTCPYFHQLDA 513 8*******************************************************************8.89999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.654	75	139	IPR017877	Myb-like domain
SMART	SM00717	0.0016	79	141	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-19	80	166	No hit	No description
CDD	cd12203	2.00E-24	81	146	No hit	No description
SMART	SM00717	1.2	425	487	IPR001005	SANT/Myb domain
Pfam	PF13837	5.9E-22	427	514	No hit	No description
PROSITE profile	PS50090	7.271	427	485	IPR017877	Myb-like domain
CDD	cd12203	5.42E-23	430	492	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MGDASTTATG SAFGSSGEAA AAAAAEEDRH EEVLLRHEEN GDGDGNGAGS AFLVNNSAEE 60 DDKEDRNVED GGDRSDNFGR NRWPRQETLA LLKIRSDMDA TFRDSSLKAP LWEEVSRKLA 120 ELGYKRSGKK CKEKFENVYK YHRRTKDGRT GKSDGKTYRF FDQLEAFDQN HHPPPPPLQA 180 AAKVPHQAIT NPPISTNVSH NIFVNPNPTS NNISITLPPP PPPPTSTTSN SLPSPQTIIT 240 KSMITNHNNN INGLLFSSPT SSSTASDEEF QARHKRKRKW RDFFRRLTRE VVRKQEEMHK 300 RFLETVAKCE HERTAREEAW RLQEMARINR EHEILLQERS AATAKDAALI AFLQKVSGVT 360 QNLQIISTDN VALSVLNNSI NNNHHNNNTN NHTISLPAPQ PAAKQAATAA PPHVRSLSTT 420 SSSSWSSRWP KAEVEALINL RTNLDLKYEE NVPKGPLWED ISAGMRRLGY DRSSKRCKEK 480 WENINKYFKK VKDSDKKRSD DSKTCPYFHQ LDAIYREKLK NIDPKAQENG APHPQQPPPH 540 FGMEPLMVQP ERQWPLQEEE YDQEEEVDRD TSSSTEVEDQ DHDDHDNHRE GTGDGSYGIV 600 SNVQSSMDMV E

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MGDASTTATG SAFGSSGEAA AAAAAEEDRH EEVLLRHEEN GDGDGNGAGS AFLVNNSAEE  60
DDKEDRNVED GGDRSDNFGR NRWPRQETLA LLKIRSDMDA TFRDSSLKAP LWEEVSRKLA  120
ELGYKRSGKK CKEKFENVYK YHRRTKDGRT GKSDGKTYRF FDQLEAFDQN HHPPPPPLQA  180
AAKVPHQAIT NPPISTNVSH NIFVNPNPTS NNISITLPPP PPPPTSTTSN SLPSPQTIIT  240
KSMITNHNNN INGLLFSSPT SSSTASDEEF QARHKRKRKW RDFFRRLTRE VVRKQEEMHK  300
RFLETVAKCE HERTAREEAW RLQEMARINR EHEILLQERS AATAKDAALI AFLQKVSGVT  360
QNLQIISTDN VALSVLNNSI NNNHHNNNTN NHTISLPAPQ PAAKQAATAA PPHVRSLSTT  420
SSSSWSSRWP KAEVEALINL RTNLDLKYEE NVPKGPLWED ISAGMRRLGY DRSSKRCKEK  480
WENINKYFKK VKDSDKKRSD DSKTCPYFHQ LDAIYREKLK NIDPKAQENG APHPQQPPPH  540
FGMEPLMVQP ERQWPLQEEE YDQEEEVDRD TSSSTEVEDQ DHDDHDNHRE GTGDGSYGIV  600
SNVQSSMDMV E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	KRSGKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108641.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	3e-35	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBank	AL606587	3e-35	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	3e-35	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	3e-35	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	3e-35	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBank	X68261	3e-35	X68261.1 O.sativa gt-2 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108641.1	0.0	trihelix transcription factor GT-2
Swissprot	Q39117	1e-137	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	W9S035	0.0	W9S035_9ROSA; Trihelix transcription factor GT-2
STRING	XP_010108641.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-70	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	21400857