PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108679.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 497aa MW: 53594.2 Da PI: 6.6641

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108679.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.5e-40	144	204	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss XP_010108679.1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 204 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	141	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSEFKDSAIK LFGKTIPLLL NQEVSCNDEP SMATSVVDSD AGTVGTGESF SDQKLLRVSS 60 PNKESSSEEE GDGDKETSSG KENSEKDNVS DQSAEDTKDP TTSVVISENH KSPLVERETS 120 SLKSSKSAEQ SEISNPQEKT LRKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KNSSASHYRH LVISDALEKA QVNAANGVHN PTLGSNGTVL 240 TFGTDSPLCE SMASALNLVE RTKNSAPNGF HNPENRVIVS IGVGDNADNQ SCGSSITAST 300 SSDKGGKPVI KDYQGFPSQV PCFPGPPWPY PWNSAQWTSA LPPPAFCHSG FPVSFYPPPP 360 YWGSTVPGSW NVPCFSPASS TTNLSTSALG KHPRDGEILN PTSSHKENSD KENSTSSERC 420 VLIPKTLRID DPTEAARSSI WTTLGIKNET LSSVSGGGLY KAFQSKGDRK THVVETSPVL 480 QANPAALSRS LTFLESI

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSEFKDSAIK LFGKTIPLLL NQEVSCNDEP SMATSVVDSD AGTVGTGESF SDQKLLRVSS  60
PNKESSSEEE GDGDKETSSG KENSEKDNVS DQSAEDTKDP TTSVVISENH KSPLVERETS  120
SLKSSKSAEQ SEISNPQEKT LRKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KNSSASHYRH LVISDALEKA QVNAANGVHN PTLGSNGTVL  240
TFGTDSPLCE SMASALNLVE RTKNSAPNGF HNPENRVIVS IGVGDNADNQ SCGSSITAST  300
SSDKGGKPVI KDYQGFPSQV PCFPGPPWPY PWNSAQWTSA LPPPAFCHSG FPVSFYPPPP  360
YWGSTVPGSW NVPCFSPASS TTNLSTSALG KHPRDGEILN PTSSHKENSD KENSTSSERC  420
VLIPKTLRID DPTEAARSSI WTTLGIKNET LSSVSGGGLY KAFQSKGDRK THVVETSPVL  480
QANPAALSRS LTFLESI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108679.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108679.1	0.0	cyclic dof factor 2
TrEMBL	W9S8B0	0.0	W9S8B0_9ROSA; Dof zinc finger protein
STRING	XP_010108679.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-83	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	21398751