PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108682.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 489aa    MW: 54321.7 Da    PI: 6.3115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108682.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-16163208147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010108682.1 163 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 208
                      899*****************************.***********996 PP
2Myb_DNA-binding56.75.5e-18215258146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010108682.1 215 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 258
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.632158209IPR017930Myb domain
SMARTSM007172.2E-14162211IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-28163256IPR009057Homeodomain-like
PfamPF002499.9E-16163208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-26164216IPR009057Homeodomain-like
CDDcd001673.69E-13166207No hitNo description
PROSITE profilePS5129427.372210264IPR017930Myb domain
SMARTSM007178.9E-15214262IPR001005SANT/Myb domain
PfamPF002491.3E-14215257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-21217263IPR009057Homeodomain-like
CDDcd001676.14E-12217257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MANNCIIYTT TAAAAAEEEE EEQIQNGHIS TSSPYNNSHC SSMGLVYADM NSLSLSPNYK  60
SSLVSSVSSQ ESFASKCSEI VVENGRAFWG FPLMGNFVPK SFEEHQNSSG EVMEGKGCES  120
SDGILFGENK GNLEDENLVS HDQNIGVVNG KETDSGQSKL CARGHWRPAE DAKLKELVAL  180
YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RIYGNKWAMI  240
ARLFPGRTDN AVKNHWHVIM ARKYREQSSA YRRRKLSQSI YRRMDIQENS NNNNNSSNFV  300
CGISDHQTSP RGDVPVPPQY CFGSIVSAHG SAGLGNASSF PFGGFNGGGV SYCFNCSPHM  360
TGGAEPFSSN KVPSNSGLFC AHQITPFEFF PDGAKSNDLT MDMLSQNKSF EYRPSDENQT  420
DVGFHHHHDH HHHHHHHHNQ YQQSLQSFSN STSQVSGGEN EEAVGLSLHF DEGIPIPPQF  480
IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-341632637107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108682.20.0myb-related protein A
TrEMBLW9S0B10.0W9S0B1_9ROSA; Transcription factor
STRINGXP_010108682.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-76myb domain protein 105